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Curated Model Development Using NEUROiD: A Web-Based NEUROmotor Integration and Design Platform

Decades of research on neuromotor circuits and systems has provided valuable information on neuronal control of movement. Computational models of several elements of the neuromotor system have been developed at various scales, from sub-cellular to system. While several small models abound, their str...

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Autores principales: Iyengar, Raghu Sesha, Pithapuram, Madhav Vinodh, Singh, Avinash Kumar, Raghavan, Mohan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2019
Materias:
Ict
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6693358/
https://www.ncbi.nlm.nih.gov/pubmed/31440153
http://dx.doi.org/10.3389/fninf.2019.00056
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author Iyengar, Raghu Sesha
Pithapuram, Madhav Vinodh
Singh, Avinash Kumar
Raghavan, Mohan
author_facet Iyengar, Raghu Sesha
Pithapuram, Madhav Vinodh
Singh, Avinash Kumar
Raghavan, Mohan
author_sort Iyengar, Raghu Sesha
collection PubMed
description Decades of research on neuromotor circuits and systems has provided valuable information on neuronal control of movement. Computational models of several elements of the neuromotor system have been developed at various scales, from sub-cellular to system. While several small models abound, their structured integration is the key to building larger and more biologically realistic models which can predict the behavior of the system in different scenarios. This effort calls for integration of elements across neuroscience and musculoskeletal biomechanics. There is also a need for development of methods and tools for structured integration that yield larger in silico models demonstrating a set of desired system responses. We take a small step in this direction with the NEUROmotor integration and Design (NEUROiD) platform. NEUROiD helps integrate results from motor systems anatomy, physiology, and biomechanics into an integrated neuromotor system model. Simulation and visualization of the model across multiple scales is supported. Standard electrophysiological operations such as slicing, current injection, recording of membrane potential, and local field potential are part of NEUROiD. The platform allows traceability of model parameters to primary literature. We illustrate the power and utility of NEUROiD by building a simple ankle model and its controlling neural circuitry by curating a set of published components. NEUROiD allows researchers to utilize remote high-performance computers for simulation, while controlling the model using a web browser.
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spelling pubmed-66933582019-08-22 Curated Model Development Using NEUROiD: A Web-Based NEUROmotor Integration and Design Platform Iyengar, Raghu Sesha Pithapuram, Madhav Vinodh Singh, Avinash Kumar Raghavan, Mohan Front Neuroinform Ict Decades of research on neuromotor circuits and systems has provided valuable information on neuronal control of movement. Computational models of several elements of the neuromotor system have been developed at various scales, from sub-cellular to system. While several small models abound, their structured integration is the key to building larger and more biologically realistic models which can predict the behavior of the system in different scenarios. This effort calls for integration of elements across neuroscience and musculoskeletal biomechanics. There is also a need for development of methods and tools for structured integration that yield larger in silico models demonstrating a set of desired system responses. We take a small step in this direction with the NEUROmotor integration and Design (NEUROiD) platform. NEUROiD helps integrate results from motor systems anatomy, physiology, and biomechanics into an integrated neuromotor system model. Simulation and visualization of the model across multiple scales is supported. Standard electrophysiological operations such as slicing, current injection, recording of membrane potential, and local field potential are part of NEUROiD. The platform allows traceability of model parameters to primary literature. We illustrate the power and utility of NEUROiD by building a simple ankle model and its controlling neural circuitry by curating a set of published components. NEUROiD allows researchers to utilize remote high-performance computers for simulation, while controlling the model using a web browser. Frontiers Media S.A. 2019-08-07 /pmc/articles/PMC6693358/ /pubmed/31440153 http://dx.doi.org/10.3389/fninf.2019.00056 Text en Copyright © 2019 Iyengar, Pithapuram, Singh and Raghavan. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Ict
Iyengar, Raghu Sesha
Pithapuram, Madhav Vinodh
Singh, Avinash Kumar
Raghavan, Mohan
Curated Model Development Using NEUROiD: A Web-Based NEUROmotor Integration and Design Platform
title Curated Model Development Using NEUROiD: A Web-Based NEUROmotor Integration and Design Platform
title_full Curated Model Development Using NEUROiD: A Web-Based NEUROmotor Integration and Design Platform
title_fullStr Curated Model Development Using NEUROiD: A Web-Based NEUROmotor Integration and Design Platform
title_full_unstemmed Curated Model Development Using NEUROiD: A Web-Based NEUROmotor Integration and Design Platform
title_short Curated Model Development Using NEUROiD: A Web-Based NEUROmotor Integration and Design Platform
title_sort curated model development using neuroid: a web-based neuromotor integration and design platform
topic Ict
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6693358/
https://www.ncbi.nlm.nih.gov/pubmed/31440153
http://dx.doi.org/10.3389/fninf.2019.00056
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