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Analysis and Modeling of the Variations of Root Branching Density Within Individual Plants and Among Species
Branching density (or the reciprocal: inter-branch distance) is an important trait which contributes to defining the number of roots in individual plants. The environmental and local variations in inter-branch distance have often been stressed, and simulations models have been put forward to take th...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2019
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6694179/ https://www.ncbi.nlm.nih.gov/pubmed/31440270 http://dx.doi.org/10.3389/fpls.2019.01020 |
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author | Pagès, Loïc |
author_facet | Pagès, Loïc |
author_sort | Pagès, Loïc |
collection | PubMed |
description | Branching density (or the reciprocal: inter-branch distance) is an important trait which contributes to defining the number of roots in individual plants. The environmental and local variations in inter-branch distance have often been stressed, and simulations models have been put forward to take them into account within the dynamics of root system architecture (RSA). However, little is known about the interspecific and intra-plant variations of inter-branch distance. In this paper, we present an analysis which draws on 40 samples of plants belonging to 36 species collected in homogeneous soils, to address how the variations in inter-branch distance are structured within individual plants, and how this structure varies from one species to another. Using measurements of inter-branch distance on various roots of the same species and our knowledge of the branching process, we defined a simple and generic model dedicated to the simulation of the observed variations. This model distinguishes between two sub-processes: i) the longitudinal location of potential branching sites and ii) the effective emergence of lateral roots at these sites. Thus, it represents the variations in distance between the potential sites (with two parameters), and the probability of emergence of a lateral root at each site (one parameter). We show the ability of this model to account for the main variations in inter-branch distances with a limited number of parameters, and we estimated them for the different species. These parameters can be considered as promising traits to characterize—in a comprehensive and simple way—the genetic and environmental variations in the whole branching process at plant level. Based on the results, we make recommendations for carrying out comparable measurements of the branching density in developed plants. Moreover, we suggest the integration of this new model as a module in future RSA simulators, to improve their capacity to account for this important and highly variable characteristic of plant species. |
format | Online Article Text |
id | pubmed-6694179 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-66941792019-08-22 Analysis and Modeling of the Variations of Root Branching Density Within Individual Plants and Among Species Pagès, Loïc Front Plant Sci Plant Science Branching density (or the reciprocal: inter-branch distance) is an important trait which contributes to defining the number of roots in individual plants. The environmental and local variations in inter-branch distance have often been stressed, and simulations models have been put forward to take them into account within the dynamics of root system architecture (RSA). However, little is known about the interspecific and intra-plant variations of inter-branch distance. In this paper, we present an analysis which draws on 40 samples of plants belonging to 36 species collected in homogeneous soils, to address how the variations in inter-branch distance are structured within individual plants, and how this structure varies from one species to another. Using measurements of inter-branch distance on various roots of the same species and our knowledge of the branching process, we defined a simple and generic model dedicated to the simulation of the observed variations. This model distinguishes between two sub-processes: i) the longitudinal location of potential branching sites and ii) the effective emergence of lateral roots at these sites. Thus, it represents the variations in distance between the potential sites (with two parameters), and the probability of emergence of a lateral root at each site (one parameter). We show the ability of this model to account for the main variations in inter-branch distances with a limited number of parameters, and we estimated them for the different species. These parameters can be considered as promising traits to characterize—in a comprehensive and simple way—the genetic and environmental variations in the whole branching process at plant level. Based on the results, we make recommendations for carrying out comparable measurements of the branching density in developed plants. Moreover, we suggest the integration of this new model as a module in future RSA simulators, to improve their capacity to account for this important and highly variable characteristic of plant species. Frontiers Media S.A. 2019-08-08 /pmc/articles/PMC6694179/ /pubmed/31440270 http://dx.doi.org/10.3389/fpls.2019.01020 Text en Copyright © 2019 Pagès http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Plant Science Pagès, Loïc Analysis and Modeling of the Variations of Root Branching Density Within Individual Plants and Among Species |
title | Analysis and Modeling of the Variations of Root Branching Density Within Individual Plants and Among Species |
title_full | Analysis and Modeling of the Variations of Root Branching Density Within Individual Plants and Among Species |
title_fullStr | Analysis and Modeling of the Variations of Root Branching Density Within Individual Plants and Among Species |
title_full_unstemmed | Analysis and Modeling of the Variations of Root Branching Density Within Individual Plants and Among Species |
title_short | Analysis and Modeling of the Variations of Root Branching Density Within Individual Plants and Among Species |
title_sort | analysis and modeling of the variations of root branching density within individual plants and among species |
topic | Plant Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6694179/ https://www.ncbi.nlm.nih.gov/pubmed/31440270 http://dx.doi.org/10.3389/fpls.2019.01020 |
work_keys_str_mv | AT pagesloic analysisandmodelingofthevariationsofrootbranchingdensitywithinindividualplantsandamongspecies |