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A Kriging-Based Approach to Autonomous Experimentation with Applications to X-Ray Scattering
Modern scientific instruments are acquiring data at ever-increasing rates, leading to an exponential increase in the size of data sets. Taking full advantage of these acquisition rates will require corresponding advancements in the speed and efficiency of data analytics and experimental control. A s...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6694190/ https://www.ncbi.nlm.nih.gov/pubmed/31413339 http://dx.doi.org/10.1038/s41598-019-48114-3 |
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author | Noack, Marcus M. Yager, Kevin G. Fukuto, Masafumi Doerk, Gregory S. Li, Ruipeng Sethian, James A. |
author_facet | Noack, Marcus M. Yager, Kevin G. Fukuto, Masafumi Doerk, Gregory S. Li, Ruipeng Sethian, James A. |
author_sort | Noack, Marcus M. |
collection | PubMed |
description | Modern scientific instruments are acquiring data at ever-increasing rates, leading to an exponential increase in the size of data sets. Taking full advantage of these acquisition rates will require corresponding advancements in the speed and efficiency of data analytics and experimental control. A significant step forward would come from automatic decision-making methods that enable scientific instruments to autonomously explore scientific problems—that is, to intelligently explore parameter spaces without human intervention, selecting high-value measurements to perform based on the continually growing experimental data set. Here, we develop such an autonomous decision-making algorithm that is physics-agnostic, generalizable, and operates in an abstract multi-dimensional parameter space. Our approach relies on constructing a surrogate model that fits and interpolates the available experimental data, and is continuously refined as more data is gathered. The distribution and correlation of the data is used to generate a corresponding uncertainty across the surrogate model. By suggesting follow-up measurements in regions of greatest uncertainty, the algorithm maximally increases knowledge with each added measurement. This procedure is applied repeatedly, with the algorithm iteratively reducing model error and thus efficiently sampling the parameter space with each new measurement that it requests. We validate the method using synthetic data, demonstrating that it converges to faithful replica of test functions more rapidly than competing methods, and demonstrate the viability of the approach in an experimental context by using it to direct autonomous small-angle (SAXS) and grazing-incidence small-angle (GISAXS) x-ray scattering experiments. |
format | Online Article Text |
id | pubmed-6694190 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-66941902019-08-19 A Kriging-Based Approach to Autonomous Experimentation with Applications to X-Ray Scattering Noack, Marcus M. Yager, Kevin G. Fukuto, Masafumi Doerk, Gregory S. Li, Ruipeng Sethian, James A. Sci Rep Article Modern scientific instruments are acquiring data at ever-increasing rates, leading to an exponential increase in the size of data sets. Taking full advantage of these acquisition rates will require corresponding advancements in the speed and efficiency of data analytics and experimental control. A significant step forward would come from automatic decision-making methods that enable scientific instruments to autonomously explore scientific problems—that is, to intelligently explore parameter spaces without human intervention, selecting high-value measurements to perform based on the continually growing experimental data set. Here, we develop such an autonomous decision-making algorithm that is physics-agnostic, generalizable, and operates in an abstract multi-dimensional parameter space. Our approach relies on constructing a surrogate model that fits and interpolates the available experimental data, and is continuously refined as more data is gathered. The distribution and correlation of the data is used to generate a corresponding uncertainty across the surrogate model. By suggesting follow-up measurements in regions of greatest uncertainty, the algorithm maximally increases knowledge with each added measurement. This procedure is applied repeatedly, with the algorithm iteratively reducing model error and thus efficiently sampling the parameter space with each new measurement that it requests. We validate the method using synthetic data, demonstrating that it converges to faithful replica of test functions more rapidly than competing methods, and demonstrate the viability of the approach in an experimental context by using it to direct autonomous small-angle (SAXS) and grazing-incidence small-angle (GISAXS) x-ray scattering experiments. Nature Publishing Group UK 2019-08-14 /pmc/articles/PMC6694190/ /pubmed/31413339 http://dx.doi.org/10.1038/s41598-019-48114-3 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Noack, Marcus M. Yager, Kevin G. Fukuto, Masafumi Doerk, Gregory S. Li, Ruipeng Sethian, James A. A Kriging-Based Approach to Autonomous Experimentation with Applications to X-Ray Scattering |
title | A Kriging-Based Approach to Autonomous Experimentation with Applications to X-Ray Scattering |
title_full | A Kriging-Based Approach to Autonomous Experimentation with Applications to X-Ray Scattering |
title_fullStr | A Kriging-Based Approach to Autonomous Experimentation with Applications to X-Ray Scattering |
title_full_unstemmed | A Kriging-Based Approach to Autonomous Experimentation with Applications to X-Ray Scattering |
title_short | A Kriging-Based Approach to Autonomous Experimentation with Applications to X-Ray Scattering |
title_sort | kriging-based approach to autonomous experimentation with applications to x-ray scattering |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6694190/ https://www.ncbi.nlm.nih.gov/pubmed/31413339 http://dx.doi.org/10.1038/s41598-019-48114-3 |
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