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PICEAdatabase: a web database for Picea omics and phenotypic information
Picea belongs to the Pinaceae family and is a famous commercial tree species because of its straight trunk and excellent timber traits. Recently, omics have been widely used for fundamental and mechanism studies on Picea plants. To improve the accessibility to omics and phenotypic data and facilitat...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6694207/ https://www.ncbi.nlm.nih.gov/pubmed/31414118 http://dx.doi.org/10.1093/database/baz089 |
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author | Lu, Nan Zhu, Tianqing Ouyang, Fangqun Xia, Yan Li, Qingfen Jia, Zirui Hu, Jiwen Ling, Juanjuan Ma, Wenjun Yang, Guijuan Zhang, Hanguo Kong, Lisheng Wang, Junhui |
author_facet | Lu, Nan Zhu, Tianqing Ouyang, Fangqun Xia, Yan Li, Qingfen Jia, Zirui Hu, Jiwen Ling, Juanjuan Ma, Wenjun Yang, Guijuan Zhang, Hanguo Kong, Lisheng Wang, Junhui |
author_sort | Lu, Nan |
collection | PubMed |
description | Picea belongs to the Pinaceae family and is a famous commercial tree species because of its straight trunk and excellent timber traits. Recently, omics have been widely used for fundamental and mechanism studies on Picea plants. To improve the accessibility to omics and phenotypic data and facilitate further studies, we compiled the sequences of 2 chloroplast genomes (Picea crassifolia and Picea asperata) and 32 complete omics data sets, including 20 transcriptomes, 4 proteomes, 2 degradomes and 6 microRNAs from P. crassifolia, P. asperata, Picea balfouriana and Picea abies tissues under different treatments, in PICEAdatabase. In addition, phenotypic data on plant growth and wood property traits were collected from two field trials of P. crassifolia. PICEAdatabase also includes useful analysis tools, such as BLAST, DESeq2 and JBrowse, to assist with analyses. |
format | Online Article Text |
id | pubmed-6694207 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-66942072019-08-19 PICEAdatabase: a web database for Picea omics and phenotypic information Lu, Nan Zhu, Tianqing Ouyang, Fangqun Xia, Yan Li, Qingfen Jia, Zirui Hu, Jiwen Ling, Juanjuan Ma, Wenjun Yang, Guijuan Zhang, Hanguo Kong, Lisheng Wang, Junhui Database (Oxford) Original Article Picea belongs to the Pinaceae family and is a famous commercial tree species because of its straight trunk and excellent timber traits. Recently, omics have been widely used for fundamental and mechanism studies on Picea plants. To improve the accessibility to omics and phenotypic data and facilitate further studies, we compiled the sequences of 2 chloroplast genomes (Picea crassifolia and Picea asperata) and 32 complete omics data sets, including 20 transcriptomes, 4 proteomes, 2 degradomes and 6 microRNAs from P. crassifolia, P. asperata, Picea balfouriana and Picea abies tissues under different treatments, in PICEAdatabase. In addition, phenotypic data on plant growth and wood property traits were collected from two field trials of P. crassifolia. PICEAdatabase also includes useful analysis tools, such as BLAST, DESeq2 and JBrowse, to assist with analyses. Oxford University Press 2019-08-15 /pmc/articles/PMC6694207/ /pubmed/31414118 http://dx.doi.org/10.1093/database/baz089 Text en © The Author(s) 2019. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Article Lu, Nan Zhu, Tianqing Ouyang, Fangqun Xia, Yan Li, Qingfen Jia, Zirui Hu, Jiwen Ling, Juanjuan Ma, Wenjun Yang, Guijuan Zhang, Hanguo Kong, Lisheng Wang, Junhui PICEAdatabase: a web database for Picea omics and phenotypic information |
title | PICEAdatabase: a web database for Picea omics and phenotypic information |
title_full | PICEAdatabase: a web database for Picea omics and phenotypic information |
title_fullStr | PICEAdatabase: a web database for Picea omics and phenotypic information |
title_full_unstemmed | PICEAdatabase: a web database for Picea omics and phenotypic information |
title_short | PICEAdatabase: a web database for Picea omics and phenotypic information |
title_sort | piceadatabase: a web database for picea omics and phenotypic information |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6694207/ https://www.ncbi.nlm.nih.gov/pubmed/31414118 http://dx.doi.org/10.1093/database/baz089 |
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