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PICEAdatabase: a web database for Picea omics and phenotypic information

Picea belongs to the Pinaceae family and is a famous commercial tree species because of its straight trunk and excellent timber traits. Recently, omics have been widely used for fundamental and mechanism studies on Picea plants. To improve the accessibility to omics and phenotypic data and facilitat...

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Autores principales: Lu, Nan, Zhu, Tianqing, Ouyang, Fangqun, Xia, Yan, Li, Qingfen, Jia, Zirui, Hu, Jiwen, Ling, Juanjuan, Ma, Wenjun, Yang, Guijuan, Zhang, Hanguo, Kong, Lisheng, Wang, Junhui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6694207/
https://www.ncbi.nlm.nih.gov/pubmed/31414118
http://dx.doi.org/10.1093/database/baz089
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author Lu, Nan
Zhu, Tianqing
Ouyang, Fangqun
Xia, Yan
Li, Qingfen
Jia, Zirui
Hu, Jiwen
Ling, Juanjuan
Ma, Wenjun
Yang, Guijuan
Zhang, Hanguo
Kong, Lisheng
Wang, Junhui
author_facet Lu, Nan
Zhu, Tianqing
Ouyang, Fangqun
Xia, Yan
Li, Qingfen
Jia, Zirui
Hu, Jiwen
Ling, Juanjuan
Ma, Wenjun
Yang, Guijuan
Zhang, Hanguo
Kong, Lisheng
Wang, Junhui
author_sort Lu, Nan
collection PubMed
description Picea belongs to the Pinaceae family and is a famous commercial tree species because of its straight trunk and excellent timber traits. Recently, omics have been widely used for fundamental and mechanism studies on Picea plants. To improve the accessibility to omics and phenotypic data and facilitate further studies, we compiled the sequences of 2 chloroplast genomes (Picea crassifolia and Picea asperata) and 32 complete omics data sets, including 20 transcriptomes, 4 proteomes, 2 degradomes and 6 microRNAs from P. crassifolia, P. asperata, Picea balfouriana and Picea abies tissues under different treatments, in PICEAdatabase. In addition, phenotypic data on plant growth and wood property traits were collected from two field trials of P. crassifolia. PICEAdatabase also includes useful analysis tools, such as BLAST, DESeq2 and JBrowse, to assist with analyses.
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spelling pubmed-66942072019-08-19 PICEAdatabase: a web database for Picea omics and phenotypic information Lu, Nan Zhu, Tianqing Ouyang, Fangqun Xia, Yan Li, Qingfen Jia, Zirui Hu, Jiwen Ling, Juanjuan Ma, Wenjun Yang, Guijuan Zhang, Hanguo Kong, Lisheng Wang, Junhui Database (Oxford) Original Article Picea belongs to the Pinaceae family and is a famous commercial tree species because of its straight trunk and excellent timber traits. Recently, omics have been widely used for fundamental and mechanism studies on Picea plants. To improve the accessibility to omics and phenotypic data and facilitate further studies, we compiled the sequences of 2 chloroplast genomes (Picea crassifolia and Picea asperata) and 32 complete omics data sets, including 20 transcriptomes, 4 proteomes, 2 degradomes and 6 microRNAs from P. crassifolia, P. asperata, Picea balfouriana and Picea abies tissues under different treatments, in PICEAdatabase. In addition, phenotypic data on plant growth and wood property traits were collected from two field trials of P. crassifolia. PICEAdatabase also includes useful analysis tools, such as BLAST, DESeq2 and JBrowse, to assist with analyses. Oxford University Press 2019-08-15 /pmc/articles/PMC6694207/ /pubmed/31414118 http://dx.doi.org/10.1093/database/baz089 Text en © The Author(s) 2019. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Lu, Nan
Zhu, Tianqing
Ouyang, Fangqun
Xia, Yan
Li, Qingfen
Jia, Zirui
Hu, Jiwen
Ling, Juanjuan
Ma, Wenjun
Yang, Guijuan
Zhang, Hanguo
Kong, Lisheng
Wang, Junhui
PICEAdatabase: a web database for Picea omics and phenotypic information
title PICEAdatabase: a web database for Picea omics and phenotypic information
title_full PICEAdatabase: a web database for Picea omics and phenotypic information
title_fullStr PICEAdatabase: a web database for Picea omics and phenotypic information
title_full_unstemmed PICEAdatabase: a web database for Picea omics and phenotypic information
title_short PICEAdatabase: a web database for Picea omics and phenotypic information
title_sort piceadatabase: a web database for picea omics and phenotypic information
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6694207/
https://www.ncbi.nlm.nih.gov/pubmed/31414118
http://dx.doi.org/10.1093/database/baz089
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