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Hyperspectral imaging of common foodborne pathogens for rapid identification and differentiation

Hyperspectral imaging (HSI) provides both spatial and spectral information of a sample by combining imaging with spectroscopy. The objective of this study was to generate hyperspectral graphs of common foodborne pathogens and to develop and validate prediction models for the classification of these...

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Autores principales: Michael, Minto, Phebus, Randall K., Amamcharla, Jayendra
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6694429/
https://www.ncbi.nlm.nih.gov/pubmed/31428359
http://dx.doi.org/10.1002/fsn3.1131
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author Michael, Minto
Phebus, Randall K.
Amamcharla, Jayendra
author_facet Michael, Minto
Phebus, Randall K.
Amamcharla, Jayendra
author_sort Michael, Minto
collection PubMed
description Hyperspectral imaging (HSI) provides both spatial and spectral information of a sample by combining imaging with spectroscopy. The objective of this study was to generate hyperspectral graphs of common foodborne pathogens and to develop and validate prediction models for the classification of these pathogens. Four strains of Cronobacter sakazakii, five strains of Salmonella spp., eight strains of Escherichia coli, and one strain each of Listeria monocytogenes and Staphylococcus aureus were used in the study. Principal component analysis and kNN (k‐nearest neighbor) classifier model were used for the classification of hyperspectra of various bacterial cells, which were then validated using the cross‐validation technique. Classification accuracy of various strains within genera including C. sakazakii, Salmonella spp., and E. coli, respectively, was 100%; except within C. sakazakii, strain BAA‐894, and E. coli, strains O26, O45, and O121 had 66.67% accuracy. When all strains were studied together (irrespective of their genus) for the classification, only C. sakazakii P1, E. coli O104, O111, and O145, S. Montevideo, and L. monocytogenes had 100% classification accuracy, whereas E. coli O45 and S. Tennessee were not classified (classification accuracy of 0%). Lauric arginate treatment of C. sakazakii BAA‐894, E. coli O157, S. Senftenberg, L. monocytogenes, and S. aureus significantly affected their hyperspectral signatures, and treated cells could be differentiated from the healthy, nontreated cells.
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spelling pubmed-66944292019-08-19 Hyperspectral imaging of common foodborne pathogens for rapid identification and differentiation Michael, Minto Phebus, Randall K. Amamcharla, Jayendra Food Sci Nutr Original Research Hyperspectral imaging (HSI) provides both spatial and spectral information of a sample by combining imaging with spectroscopy. The objective of this study was to generate hyperspectral graphs of common foodborne pathogens and to develop and validate prediction models for the classification of these pathogens. Four strains of Cronobacter sakazakii, five strains of Salmonella spp., eight strains of Escherichia coli, and one strain each of Listeria monocytogenes and Staphylococcus aureus were used in the study. Principal component analysis and kNN (k‐nearest neighbor) classifier model were used for the classification of hyperspectra of various bacterial cells, which were then validated using the cross‐validation technique. Classification accuracy of various strains within genera including C. sakazakii, Salmonella spp., and E. coli, respectively, was 100%; except within C. sakazakii, strain BAA‐894, and E. coli, strains O26, O45, and O121 had 66.67% accuracy. When all strains were studied together (irrespective of their genus) for the classification, only C. sakazakii P1, E. coli O104, O111, and O145, S. Montevideo, and L. monocytogenes had 100% classification accuracy, whereas E. coli O45 and S. Tennessee were not classified (classification accuracy of 0%). Lauric arginate treatment of C. sakazakii BAA‐894, E. coli O157, S. Senftenberg, L. monocytogenes, and S. aureus significantly affected their hyperspectral signatures, and treated cells could be differentiated from the healthy, nontreated cells. John Wiley and Sons Inc. 2019-07-10 /pmc/articles/PMC6694429/ /pubmed/31428359 http://dx.doi.org/10.1002/fsn3.1131 Text en © 2019 The Authors. Food Science & Nutrition published by Wiley Periodicals, Inc. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Michael, Minto
Phebus, Randall K.
Amamcharla, Jayendra
Hyperspectral imaging of common foodborne pathogens for rapid identification and differentiation
title Hyperspectral imaging of common foodborne pathogens for rapid identification and differentiation
title_full Hyperspectral imaging of common foodborne pathogens for rapid identification and differentiation
title_fullStr Hyperspectral imaging of common foodborne pathogens for rapid identification and differentiation
title_full_unstemmed Hyperspectral imaging of common foodborne pathogens for rapid identification and differentiation
title_short Hyperspectral imaging of common foodborne pathogens for rapid identification and differentiation
title_sort hyperspectral imaging of common foodborne pathogens for rapid identification and differentiation
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6694429/
https://www.ncbi.nlm.nih.gov/pubmed/31428359
http://dx.doi.org/10.1002/fsn3.1131
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