gndDb, a Database of Partial gnd Sequences To Assist with Analysis of Escherichia coli Communities Using High-Throughput Sequencing

The use of culture methods to detect Escherichia coli diversity does not provide sufficient resolution to identify strains present at low levels. Here, we target the hypervariable gnd gene and describe a database containing 534 distinct partial gnd sequences and associated O groups for use with cult...

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Detalles Bibliográficos
Autores principales: Cookson, Adrian L., Lacher, David W., Scheutz, Flemming, Wilkinson, David A., Biggs, Patrick J., Marshall, Jonathan C., Brightwell, Gale
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2019
Materias:
Databases and Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6696633/
https://www.ncbi.nlm.nih.gov/pubmed/31416858
http://dx.doi.org/10.1128/MRA.00476-19
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author Cookson, Adrian L.
Lacher, David W.
Scheutz, Flemming
Wilkinson, David A.
Biggs, Patrick J.
Marshall, Jonathan C.
Brightwell, Gale
author_facet Cookson, Adrian L.
Lacher, David W.
Scheutz, Flemming
Wilkinson, David A.
Biggs, Patrick J.
Marshall, Jonathan C.
Brightwell, Gale
author_sort Cookson, Adrian L.
collection PubMed
description The use of culture methods to detect Escherichia coli diversity does not provide sufficient resolution to identify strains present at low levels. Here, we target the hypervariable gnd gene and describe a database containing 534 distinct partial gnd sequences and associated O groups for use with culture-independent E. coli community analysis.
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spelling pubmed-66966332019-08-29 gndDb, a Database of Partial gnd Sequences To Assist with Analysis of Escherichia coli Communities Using High-Throughput Sequencing Cookson, Adrian L. Lacher, David W. Scheutz, Flemming Wilkinson, David A. Biggs, Patrick J. Marshall, Jonathan C. Brightwell, Gale Microbiol Resour Announc Databases and Software The use of culture methods to detect Escherichia coli diversity does not provide sufficient resolution to identify strains present at low levels. Here, we target the hypervariable gnd gene and describe a database containing 534 distinct partial gnd sequences and associated O groups for use with culture-independent E. coli community analysis. American Society for Microbiology 2019-08-15 /pmc/articles/PMC6696633/ /pubmed/31416858 http://dx.doi.org/10.1128/MRA.00476-19 Text en Copyright © 2019 Cookson et al. https://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Databases and Software
Cookson, Adrian L.
Lacher, David W.
Scheutz, Flemming
Wilkinson, David A.
Biggs, Patrick J.
Marshall, Jonathan C.
Brightwell, Gale
gndDb, a Database of Partial gnd Sequences To Assist with Analysis of Escherichia coli Communities Using High-Throughput Sequencing
title gndDb, a Database of Partial gnd Sequences To Assist with Analysis of Escherichia coli Communities Using High-Throughput Sequencing
title_full gndDb, a Database of Partial gnd Sequences To Assist with Analysis of Escherichia coli Communities Using High-Throughput Sequencing
title_fullStr gndDb, a Database of Partial gnd Sequences To Assist with Analysis of Escherichia coli Communities Using High-Throughput Sequencing
title_full_unstemmed gndDb, a Database of Partial gnd Sequences To Assist with Analysis of Escherichia coli Communities Using High-Throughput Sequencing
title_short gndDb, a Database of Partial gnd Sequences To Assist with Analysis of Escherichia coli Communities Using High-Throughput Sequencing
title_sort gnddb, a database of partial gnd sequences to assist with analysis of escherichia coli communities using high-throughput sequencing
topic Databases and Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6696633/
https://www.ncbi.nlm.nih.gov/pubmed/31416858
http://dx.doi.org/10.1128/MRA.00476-19
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