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Increase Trichomonas vaginalis detection based on urine routine analysis through a machine learning approach

Trichomonas vaginalis (T. vaginalis) detection remains an unsolved problem in using of automated instruments for urinalysis. The study proposes a machine learning (ML)-based strategy to increase the detection rate of T. vaginalis in urine. On the basis of urinalysis data from a teaching hospital dur...

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Autores principales: Wang, Hsin-Yao, Hung, Chung-Chih, Chen, Chun-Hsien, Lee, Tzong-Yi, Huang, Kai-Yao, Ning, Hsiao-Chen, Lai, Nan-Chang, Tsai, Ming-Hsiu, Lu, Li-Chuan, Tseng, Yi-Ju, Lu, Jang-Jih
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6698480/
https://www.ncbi.nlm.nih.gov/pubmed/31423009
http://dx.doi.org/10.1038/s41598-019-47361-8
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author Wang, Hsin-Yao
Hung, Chung-Chih
Chen, Chun-Hsien
Lee, Tzong-Yi
Huang, Kai-Yao
Ning, Hsiao-Chen
Lai, Nan-Chang
Tsai, Ming-Hsiu
Lu, Li-Chuan
Tseng, Yi-Ju
Lu, Jang-Jih
author_facet Wang, Hsin-Yao
Hung, Chung-Chih
Chen, Chun-Hsien
Lee, Tzong-Yi
Huang, Kai-Yao
Ning, Hsiao-Chen
Lai, Nan-Chang
Tsai, Ming-Hsiu
Lu, Li-Chuan
Tseng, Yi-Ju
Lu, Jang-Jih
author_sort Wang, Hsin-Yao
collection PubMed
description Trichomonas vaginalis (T. vaginalis) detection remains an unsolved problem in using of automated instruments for urinalysis. The study proposes a machine learning (ML)-based strategy to increase the detection rate of T. vaginalis in urine. On the basis of urinalysis data from a teaching hospital during 2009–2013, individuals underwent at least one urinalysis test were included. Logistic regression, support vector machine, and random forest, were used to select specimens with a high risk of T. vaginalis infection for confirmation through microscopic examinations. A total of 410,952 and 428,203 specimens from men and women were tested, of which 91 (0.02%) and 517 (0.12%) T. vaginalis-positive specimens were reported, respectively. The prediction models of T. vaginalis infection attained an area under the receiver operating characteristic curve of more than 0.87 for women and 0.83 for men. The Lift values of the top 5% risky specimens were above eight. While the most risky vigintile was picked out by the models and confirmed by microscopic examination, the incremental cost-effectiveness ratios for T. vaginalis detection in men and women were USD$170.1 and USD$29.7, respectively. On the basis of urinalysis, the proposed strategy can significantly increase the detection rate of T. vaginalis in a cost-effective manner.
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spelling pubmed-66984802019-08-21 Increase Trichomonas vaginalis detection based on urine routine analysis through a machine learning approach Wang, Hsin-Yao Hung, Chung-Chih Chen, Chun-Hsien Lee, Tzong-Yi Huang, Kai-Yao Ning, Hsiao-Chen Lai, Nan-Chang Tsai, Ming-Hsiu Lu, Li-Chuan Tseng, Yi-Ju Lu, Jang-Jih Sci Rep Article Trichomonas vaginalis (T. vaginalis) detection remains an unsolved problem in using of automated instruments for urinalysis. The study proposes a machine learning (ML)-based strategy to increase the detection rate of T. vaginalis in urine. On the basis of urinalysis data from a teaching hospital during 2009–2013, individuals underwent at least one urinalysis test were included. Logistic regression, support vector machine, and random forest, were used to select specimens with a high risk of T. vaginalis infection for confirmation through microscopic examinations. A total of 410,952 and 428,203 specimens from men and women were tested, of which 91 (0.02%) and 517 (0.12%) T. vaginalis-positive specimens were reported, respectively. The prediction models of T. vaginalis infection attained an area under the receiver operating characteristic curve of more than 0.87 for women and 0.83 for men. The Lift values of the top 5% risky specimens were above eight. While the most risky vigintile was picked out by the models and confirmed by microscopic examination, the incremental cost-effectiveness ratios for T. vaginalis detection in men and women were USD$170.1 and USD$29.7, respectively. On the basis of urinalysis, the proposed strategy can significantly increase the detection rate of T. vaginalis in a cost-effective manner. Nature Publishing Group UK 2019-08-19 /pmc/articles/PMC6698480/ /pubmed/31423009 http://dx.doi.org/10.1038/s41598-019-47361-8 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Wang, Hsin-Yao
Hung, Chung-Chih
Chen, Chun-Hsien
Lee, Tzong-Yi
Huang, Kai-Yao
Ning, Hsiao-Chen
Lai, Nan-Chang
Tsai, Ming-Hsiu
Lu, Li-Chuan
Tseng, Yi-Ju
Lu, Jang-Jih
Increase Trichomonas vaginalis detection based on urine routine analysis through a machine learning approach
title Increase Trichomonas vaginalis detection based on urine routine analysis through a machine learning approach
title_full Increase Trichomonas vaginalis detection based on urine routine analysis through a machine learning approach
title_fullStr Increase Trichomonas vaginalis detection based on urine routine analysis through a machine learning approach
title_full_unstemmed Increase Trichomonas vaginalis detection based on urine routine analysis through a machine learning approach
title_short Increase Trichomonas vaginalis detection based on urine routine analysis through a machine learning approach
title_sort increase trichomonas vaginalis detection based on urine routine analysis through a machine learning approach
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6698480/
https://www.ncbi.nlm.nih.gov/pubmed/31423009
http://dx.doi.org/10.1038/s41598-019-47361-8
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