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Integrative analysis of Dupuytren's disease identifies novel risk locus and reveals a shared genetic etiology with BMI

Dupuytren's disease is a common inherited tissue‐specific fibrotic disorder, characterized by progressive and irreversible fibroblastic proliferation affecting the palmar fascia of the hand. Although genome‐wide association study (GWAS) have identified 24 genomic regions associated with Dupuytr...

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Autores principales: Major, Megan, Freund, Malika K., Burch, Kathryn S., Mancuso, Nicholas, Ng, Michael, Furniss, Dominic, Pasaniuc, Bogdan, Ophoff, Roel A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6699495/
https://www.ncbi.nlm.nih.gov/pubmed/31087417
http://dx.doi.org/10.1002/gepi.22209
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author Major, Megan
Freund, Malika K.
Burch, Kathryn S.
Mancuso, Nicholas
Ng, Michael
Furniss, Dominic
Pasaniuc, Bogdan
Ophoff, Roel A.
author_facet Major, Megan
Freund, Malika K.
Burch, Kathryn S.
Mancuso, Nicholas
Ng, Michael
Furniss, Dominic
Pasaniuc, Bogdan
Ophoff, Roel A.
author_sort Major, Megan
collection PubMed
description Dupuytren's disease is a common inherited tissue‐specific fibrotic disorder, characterized by progressive and irreversible fibroblastic proliferation affecting the palmar fascia of the hand. Although genome‐wide association study (GWAS) have identified 24 genomic regions associated with Dupuytrens risk, the biological mechanisms driving signal at these regions remain elusive. We identify potential biological mechanisms for Dupuytren's disease by integrating the most recent, largest GWAS (3,871 cases and 4,686 controls) with eQTLs (47 tissue panels from five consortia, total n = 3,975) to perform a transcriptome‐wide association study. We identify 43 tissue‐specific gene associations with Dupuytren's risk, including one in a novel risk region. We also estimate the genome‐wide genetic correlation between Dupuytren's disease and 45 complex traits and find significant genetic correlations between Dupuytren's disease and body mass index (BMI), type II diabetes, triglycerides, and high‐density lipoprotein (HDL), suggesting a shared genetic etiology between these traits. We further examine local genetic correlation to identify 8 and 3 novel regions significantly correlated with BMI and HDL respectively. Our results are consistent with previous epidemiological findings showing that lower BMI increases risk for Dupuytren's disease. These 12 novel risk regions provide new insight into the biological mechanisms of Dupuytren's disease and serve as a starting point for functional validation.
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spelling pubmed-66994952019-10-03 Integrative analysis of Dupuytren's disease identifies novel risk locus and reveals a shared genetic etiology with BMI Major, Megan Freund, Malika K. Burch, Kathryn S. Mancuso, Nicholas Ng, Michael Furniss, Dominic Pasaniuc, Bogdan Ophoff, Roel A. Genet Epidemiol Research Articles Dupuytren's disease is a common inherited tissue‐specific fibrotic disorder, characterized by progressive and irreversible fibroblastic proliferation affecting the palmar fascia of the hand. Although genome‐wide association study (GWAS) have identified 24 genomic regions associated with Dupuytrens risk, the biological mechanisms driving signal at these regions remain elusive. We identify potential biological mechanisms for Dupuytren's disease by integrating the most recent, largest GWAS (3,871 cases and 4,686 controls) with eQTLs (47 tissue panels from five consortia, total n = 3,975) to perform a transcriptome‐wide association study. We identify 43 tissue‐specific gene associations with Dupuytren's risk, including one in a novel risk region. We also estimate the genome‐wide genetic correlation between Dupuytren's disease and 45 complex traits and find significant genetic correlations between Dupuytren's disease and body mass index (BMI), type II diabetes, triglycerides, and high‐density lipoprotein (HDL), suggesting a shared genetic etiology between these traits. We further examine local genetic correlation to identify 8 and 3 novel regions significantly correlated with BMI and HDL respectively. Our results are consistent with previous epidemiological findings showing that lower BMI increases risk for Dupuytren's disease. These 12 novel risk regions provide new insight into the biological mechanisms of Dupuytren's disease and serve as a starting point for functional validation. John Wiley and Sons Inc. 2019-05-13 2019-09 /pmc/articles/PMC6699495/ /pubmed/31087417 http://dx.doi.org/10.1002/gepi.22209 Text en © 2019 The Authors. Genetic Epidemiology Published by Wiley Periodicals, Inc. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Major, Megan
Freund, Malika K.
Burch, Kathryn S.
Mancuso, Nicholas
Ng, Michael
Furniss, Dominic
Pasaniuc, Bogdan
Ophoff, Roel A.
Integrative analysis of Dupuytren's disease identifies novel risk locus and reveals a shared genetic etiology with BMI
title Integrative analysis of Dupuytren's disease identifies novel risk locus and reveals a shared genetic etiology with BMI
title_full Integrative analysis of Dupuytren's disease identifies novel risk locus and reveals a shared genetic etiology with BMI
title_fullStr Integrative analysis of Dupuytren's disease identifies novel risk locus and reveals a shared genetic etiology with BMI
title_full_unstemmed Integrative analysis of Dupuytren's disease identifies novel risk locus and reveals a shared genetic etiology with BMI
title_short Integrative analysis of Dupuytren's disease identifies novel risk locus and reveals a shared genetic etiology with BMI
title_sort integrative analysis of dupuytren's disease identifies novel risk locus and reveals a shared genetic etiology with bmi
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6699495/
https://www.ncbi.nlm.nih.gov/pubmed/31087417
http://dx.doi.org/10.1002/gepi.22209
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