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A chromosomal-level genome assembly for the insect vector for Chagas disease, Triatoma rubrofasciata
BACKGROUND: Triatoma rubrofasciata is a widespread pathogen vector for Chagas disease, an illness that affects approximately 7 million people worldwide. Despite its importance to human health, its evolutionary origin has not been conclusively determined. A reference genome for T. rubrofasciata is no...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6699579/ https://www.ncbi.nlm.nih.gov/pubmed/31425588 http://dx.doi.org/10.1093/gigascience/giz089 |
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author | Liu, Qin Guo, Yunhai Zhang, Yi Hu, Wei Li, Yuanyuan Zhu, Dan Zhou, Zhengbin Wu, Jiatong Chen, Nansheng Zhou, Xiao-Nong |
author_facet | Liu, Qin Guo, Yunhai Zhang, Yi Hu, Wei Li, Yuanyuan Zhu, Dan Zhou, Zhengbin Wu, Jiatong Chen, Nansheng Zhou, Xiao-Nong |
author_sort | Liu, Qin |
collection | PubMed |
description | BACKGROUND: Triatoma rubrofasciata is a widespread pathogen vector for Chagas disease, an illness that affects approximately 7 million people worldwide. Despite its importance to human health, its evolutionary origin has not been conclusively determined. A reference genome for T. rubrofasciata is not yet available. FINDING: We have sequenced the genome of a female individual with T. rubrofasciatausing a single molecular DNA sequencing technology (i.e., PacBio Sequel platform) and have successfully reconstructed a whole-genome (680-Mb) assembly that covers 90% of the nuclear genome (757 Mb). Through Hi-C analysis, we have reconstructed full-length chromosomes of this female individual that has 13 unique chromosomes (2n = 24 = 22 + X1 + X2) with a contig N50 of 2.72 Mb and a scaffold N50 of 50.7 Mb. This genome has achieved a high base-level accuracy of 99.99%. This platinum-grade genome assembly has 12,691 annotated protein-coding genes. More than 95.1% of BUSCO genes were single-copy completed, indicating a high level of completeness of the genome. CONCLUSION: The platinum-grade genome assembly and its annotation provide valuable information for future in-depth comparative genomics studies, including sexual determination analysis in T. rubrofasciata and the pathogenesis of Chagas disease. |
format | Online Article Text |
id | pubmed-6699579 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-66995792019-08-22 A chromosomal-level genome assembly for the insect vector for Chagas disease, Triatoma rubrofasciata Liu, Qin Guo, Yunhai Zhang, Yi Hu, Wei Li, Yuanyuan Zhu, Dan Zhou, Zhengbin Wu, Jiatong Chen, Nansheng Zhou, Xiao-Nong Gigascience Data Note BACKGROUND: Triatoma rubrofasciata is a widespread pathogen vector for Chagas disease, an illness that affects approximately 7 million people worldwide. Despite its importance to human health, its evolutionary origin has not been conclusively determined. A reference genome for T. rubrofasciata is not yet available. FINDING: We have sequenced the genome of a female individual with T. rubrofasciatausing a single molecular DNA sequencing technology (i.e., PacBio Sequel platform) and have successfully reconstructed a whole-genome (680-Mb) assembly that covers 90% of the nuclear genome (757 Mb). Through Hi-C analysis, we have reconstructed full-length chromosomes of this female individual that has 13 unique chromosomes (2n = 24 = 22 + X1 + X2) with a contig N50 of 2.72 Mb and a scaffold N50 of 50.7 Mb. This genome has achieved a high base-level accuracy of 99.99%. This platinum-grade genome assembly has 12,691 annotated protein-coding genes. More than 95.1% of BUSCO genes were single-copy completed, indicating a high level of completeness of the genome. CONCLUSION: The platinum-grade genome assembly and its annotation provide valuable information for future in-depth comparative genomics studies, including sexual determination analysis in T. rubrofasciata and the pathogenesis of Chagas disease. Oxford University Press 2019-08-19 /pmc/articles/PMC6699579/ /pubmed/31425588 http://dx.doi.org/10.1093/gigascience/giz089 Text en © The Author(s) 2019. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Data Note Liu, Qin Guo, Yunhai Zhang, Yi Hu, Wei Li, Yuanyuan Zhu, Dan Zhou, Zhengbin Wu, Jiatong Chen, Nansheng Zhou, Xiao-Nong A chromosomal-level genome assembly for the insect vector for Chagas disease, Triatoma rubrofasciata |
title | A chromosomal-level genome assembly for the insect vector for Chagas disease, Triatoma rubrofasciata |
title_full | A chromosomal-level genome assembly for the insect vector for Chagas disease, Triatoma rubrofasciata |
title_fullStr | A chromosomal-level genome assembly for the insect vector for Chagas disease, Triatoma rubrofasciata |
title_full_unstemmed | A chromosomal-level genome assembly for the insect vector for Chagas disease, Triatoma rubrofasciata |
title_short | A chromosomal-level genome assembly for the insect vector for Chagas disease, Triatoma rubrofasciata |
title_sort | chromosomal-level genome assembly for the insect vector for chagas disease, triatoma rubrofasciata |
topic | Data Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6699579/ https://www.ncbi.nlm.nih.gov/pubmed/31425588 http://dx.doi.org/10.1093/gigascience/giz089 |
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