Cargando…

Quantum mechanical static dipole polarizabilities in the QM7b and AlphaML showcase databases

While density functional theory (DFT) is often an accurate and efficient methodology for evaluating molecular properties such as energies and multipole moments, this approach often yields larger errors for response properties such as the dipole polarizability (α), which describes the tendency of a m...

Descripción completa

Detalles Bibliográficos
Autores principales: Yang, Yang, Lao, Ka Un, Wilkins, David M., Grisafi, Andrea, Ceriotti, Michele, DiStasio, Robert A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6700155/
https://www.ncbi.nlm.nih.gov/pubmed/31427579
http://dx.doi.org/10.1038/s41597-019-0157-8
_version_ 1783444809337274368
author Yang, Yang
Lao, Ka Un
Wilkins, David M.
Grisafi, Andrea
Ceriotti, Michele
DiStasio, Robert A.
author_facet Yang, Yang
Lao, Ka Un
Wilkins, David M.
Grisafi, Andrea
Ceriotti, Michele
DiStasio, Robert A.
author_sort Yang, Yang
collection PubMed
description While density functional theory (DFT) is often an accurate and efficient methodology for evaluating molecular properties such as energies and multipole moments, this approach often yields larger errors for response properties such as the dipole polarizability (α), which describes the tendency of a molecule to form an induced dipole moment in the presence of an electric field. In this work, we provide static α tensors (and other molecular properties such as total energy components, dipole and quadrupole moments, etc.) computed using quantum chemical (QC) and DFT methodologies for all 7,211 molecules in the QM7b database. We also provide the same quantities for the 52 molecules in the AlphaML showcase database, which includes the DNA/RNA nucleobases, uncharged amino acids, several open-chain and cyclic carbohydrates, five popular pharmaceutical molecules, and 23 isomers of C(8)H(n). All QC calculations were performed using linear-response coupled-cluster theory including single and double excitations (LR-CCSD), a sophisticated approach for electron correlation, and the d-aug-cc-pVDZ basis set to mitigate basis set incompleteness error. DFT calculations employed the B3LYP and SCAN0 hybrid functionals, in conjunction with d-aug-cc-pVDZ (B3LYP and SCAN0) and d-aug-cc-pVTZ (B3LYP).
format Online
Article
Text
id pubmed-6700155
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-67001552019-08-26 Quantum mechanical static dipole polarizabilities in the QM7b and AlphaML showcase databases Yang, Yang Lao, Ka Un Wilkins, David M. Grisafi, Andrea Ceriotti, Michele DiStasio, Robert A. Sci Data Data Descriptor While density functional theory (DFT) is often an accurate and efficient methodology for evaluating molecular properties such as energies and multipole moments, this approach often yields larger errors for response properties such as the dipole polarizability (α), which describes the tendency of a molecule to form an induced dipole moment in the presence of an electric field. In this work, we provide static α tensors (and other molecular properties such as total energy components, dipole and quadrupole moments, etc.) computed using quantum chemical (QC) and DFT methodologies for all 7,211 molecules in the QM7b database. We also provide the same quantities for the 52 molecules in the AlphaML showcase database, which includes the DNA/RNA nucleobases, uncharged amino acids, several open-chain and cyclic carbohydrates, five popular pharmaceutical molecules, and 23 isomers of C(8)H(n). All QC calculations were performed using linear-response coupled-cluster theory including single and double excitations (LR-CCSD), a sophisticated approach for electron correlation, and the d-aug-cc-pVDZ basis set to mitigate basis set incompleteness error. DFT calculations employed the B3LYP and SCAN0 hybrid functionals, in conjunction with d-aug-cc-pVDZ (B3LYP and SCAN0) and d-aug-cc-pVTZ (B3LYP). Nature Publishing Group UK 2019-08-19 /pmc/articles/PMC6700155/ /pubmed/31427579 http://dx.doi.org/10.1038/s41597-019-0157-8 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files associated with this article.
spellingShingle Data Descriptor
Yang, Yang
Lao, Ka Un
Wilkins, David M.
Grisafi, Andrea
Ceriotti, Michele
DiStasio, Robert A.
Quantum mechanical static dipole polarizabilities in the QM7b and AlphaML showcase databases
title Quantum mechanical static dipole polarizabilities in the QM7b and AlphaML showcase databases
title_full Quantum mechanical static dipole polarizabilities in the QM7b and AlphaML showcase databases
title_fullStr Quantum mechanical static dipole polarizabilities in the QM7b and AlphaML showcase databases
title_full_unstemmed Quantum mechanical static dipole polarizabilities in the QM7b and AlphaML showcase databases
title_short Quantum mechanical static dipole polarizabilities in the QM7b and AlphaML showcase databases
title_sort quantum mechanical static dipole polarizabilities in the qm7b and alphaml showcase databases
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6700155/
https://www.ncbi.nlm.nih.gov/pubmed/31427579
http://dx.doi.org/10.1038/s41597-019-0157-8
work_keys_str_mv AT yangyang quantummechanicalstaticdipolepolarizabilitiesintheqm7bandalphamlshowcasedatabases
AT laokaun quantummechanicalstaticdipolepolarizabilitiesintheqm7bandalphamlshowcasedatabases
AT wilkinsdavidm quantummechanicalstaticdipolepolarizabilitiesintheqm7bandalphamlshowcasedatabases
AT grisafiandrea quantummechanicalstaticdipolepolarizabilitiesintheqm7bandalphamlshowcasedatabases
AT ceriottimichele quantummechanicalstaticdipolepolarizabilitiesintheqm7bandalphamlshowcasedatabases
AT distasioroberta quantummechanicalstaticdipolepolarizabilitiesintheqm7bandalphamlshowcasedatabases