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Characterization of a nifH-Harboring Bacterial Community in the Soil-Limited Gotjawal Forest
Using a high-throughput metagenomic approach, we evaluated nifH-harboring bacterial communities and their assembly in the Gotjawal forest, which was naturally formed on basalt rocks with thin layer of soil. Significant differences in soil properties and community structure were observed in compariso...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6700220/ https://www.ncbi.nlm.nih.gov/pubmed/31456776 http://dx.doi.org/10.3389/fmicb.2019.01858 |
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author | Lee, Tae Kwon Han, Il Kim, Min Sung Seong, Hoon Je Kim, Jong-Shik Sul, Woo Jun |
author_facet | Lee, Tae Kwon Han, Il Kim, Min Sung Seong, Hoon Je Kim, Jong-Shik Sul, Woo Jun |
author_sort | Lee, Tae Kwon |
collection | PubMed |
description | Using a high-throughput metagenomic approach, we evaluated nifH-harboring bacterial communities and their assembly in the Gotjawal forest, which was naturally formed on basalt rocks with thin layer of soil. Significant differences in soil properties and community structure were observed in comparison with similar communities in various habitats, including other lava-formed forests (on Jeju Island and in Hawaii) and in regions with high humidity (Florida) or low temperatures (Alaska). nifH-harboring bacterial communities were found to assemble along gradients of environmental factors, particularly cation-exchange capacity. Unlike in other regions, in the Gotjawal forest, Paenibacillus and Clostridium, which belong to the phylum Firmicutes, were present in significantly higher proportion than in other regions. Network analysis suggested that much fewer co-occurrence relationships occurred in the Gotjawal forest than in other lava-formed forests. Our results indicate that the unique nifH-harboring bacterial community and its assembly in the Gotjawal forest are due to its distinctive soil properties, which has implications for microbial interactions and functional potentials. |
format | Online Article Text |
id | pubmed-6700220 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-67002202019-08-27 Characterization of a nifH-Harboring Bacterial Community in the Soil-Limited Gotjawal Forest Lee, Tae Kwon Han, Il Kim, Min Sung Seong, Hoon Je Kim, Jong-Shik Sul, Woo Jun Front Microbiol Microbiology Using a high-throughput metagenomic approach, we evaluated nifH-harboring bacterial communities and their assembly in the Gotjawal forest, which was naturally formed on basalt rocks with thin layer of soil. Significant differences in soil properties and community structure were observed in comparison with similar communities in various habitats, including other lava-formed forests (on Jeju Island and in Hawaii) and in regions with high humidity (Florida) or low temperatures (Alaska). nifH-harboring bacterial communities were found to assemble along gradients of environmental factors, particularly cation-exchange capacity. Unlike in other regions, in the Gotjawal forest, Paenibacillus and Clostridium, which belong to the phylum Firmicutes, were present in significantly higher proportion than in other regions. Network analysis suggested that much fewer co-occurrence relationships occurred in the Gotjawal forest than in other lava-formed forests. Our results indicate that the unique nifH-harboring bacterial community and its assembly in the Gotjawal forest are due to its distinctive soil properties, which has implications for microbial interactions and functional potentials. Frontiers Media S.A. 2019-08-13 /pmc/articles/PMC6700220/ /pubmed/31456776 http://dx.doi.org/10.3389/fmicb.2019.01858 Text en Copyright © 2019 Lee, Han, Kim, Seong, Kim and Sul. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Microbiology Lee, Tae Kwon Han, Il Kim, Min Sung Seong, Hoon Je Kim, Jong-Shik Sul, Woo Jun Characterization of a nifH-Harboring Bacterial Community in the Soil-Limited Gotjawal Forest |
title | Characterization of a nifH-Harboring Bacterial Community in the Soil-Limited Gotjawal Forest |
title_full | Characterization of a nifH-Harboring Bacterial Community in the Soil-Limited Gotjawal Forest |
title_fullStr | Characterization of a nifH-Harboring Bacterial Community in the Soil-Limited Gotjawal Forest |
title_full_unstemmed | Characterization of a nifH-Harboring Bacterial Community in the Soil-Limited Gotjawal Forest |
title_short | Characterization of a nifH-Harboring Bacterial Community in the Soil-Limited Gotjawal Forest |
title_sort | characterization of a nifh-harboring bacterial community in the soil-limited gotjawal forest |
topic | Microbiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6700220/ https://www.ncbi.nlm.nih.gov/pubmed/31456776 http://dx.doi.org/10.3389/fmicb.2019.01858 |
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