Cargando…

Characterization of a nifH-Harboring Bacterial Community in the Soil-Limited Gotjawal Forest

Using a high-throughput metagenomic approach, we evaluated nifH-harboring bacterial communities and their assembly in the Gotjawal forest, which was naturally formed on basalt rocks with thin layer of soil. Significant differences in soil properties and community structure were observed in compariso...

Descripción completa

Detalles Bibliográficos
Autores principales: Lee, Tae Kwon, Han, Il, Kim, Min Sung, Seong, Hoon Je, Kim, Jong-Shik, Sul, Woo Jun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6700220/
https://www.ncbi.nlm.nih.gov/pubmed/31456776
http://dx.doi.org/10.3389/fmicb.2019.01858
_version_ 1783444824795381760
author Lee, Tae Kwon
Han, Il
Kim, Min Sung
Seong, Hoon Je
Kim, Jong-Shik
Sul, Woo Jun
author_facet Lee, Tae Kwon
Han, Il
Kim, Min Sung
Seong, Hoon Je
Kim, Jong-Shik
Sul, Woo Jun
author_sort Lee, Tae Kwon
collection PubMed
description Using a high-throughput metagenomic approach, we evaluated nifH-harboring bacterial communities and their assembly in the Gotjawal forest, which was naturally formed on basalt rocks with thin layer of soil. Significant differences in soil properties and community structure were observed in comparison with similar communities in various habitats, including other lava-formed forests (on Jeju Island and in Hawaii) and in regions with high humidity (Florida) or low temperatures (Alaska). nifH-harboring bacterial communities were found to assemble along gradients of environmental factors, particularly cation-exchange capacity. Unlike in other regions, in the Gotjawal forest, Paenibacillus and Clostridium, which belong to the phylum Firmicutes, were present in significantly higher proportion than in other regions. Network analysis suggested that much fewer co-occurrence relationships occurred in the Gotjawal forest than in other lava-formed forests. Our results indicate that the unique nifH-harboring bacterial community and its assembly in the Gotjawal forest are due to its distinctive soil properties, which has implications for microbial interactions and functional potentials.
format Online
Article
Text
id pubmed-6700220
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-67002202019-08-27 Characterization of a nifH-Harboring Bacterial Community in the Soil-Limited Gotjawal Forest Lee, Tae Kwon Han, Il Kim, Min Sung Seong, Hoon Je Kim, Jong-Shik Sul, Woo Jun Front Microbiol Microbiology Using a high-throughput metagenomic approach, we evaluated nifH-harboring bacterial communities and their assembly in the Gotjawal forest, which was naturally formed on basalt rocks with thin layer of soil. Significant differences in soil properties and community structure were observed in comparison with similar communities in various habitats, including other lava-formed forests (on Jeju Island and in Hawaii) and in regions with high humidity (Florida) or low temperatures (Alaska). nifH-harboring bacterial communities were found to assemble along gradients of environmental factors, particularly cation-exchange capacity. Unlike in other regions, in the Gotjawal forest, Paenibacillus and Clostridium, which belong to the phylum Firmicutes, were present in significantly higher proportion than in other regions. Network analysis suggested that much fewer co-occurrence relationships occurred in the Gotjawal forest than in other lava-formed forests. Our results indicate that the unique nifH-harboring bacterial community and its assembly in the Gotjawal forest are due to its distinctive soil properties, which has implications for microbial interactions and functional potentials. Frontiers Media S.A. 2019-08-13 /pmc/articles/PMC6700220/ /pubmed/31456776 http://dx.doi.org/10.3389/fmicb.2019.01858 Text en Copyright © 2019 Lee, Han, Kim, Seong, Kim and Sul. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Lee, Tae Kwon
Han, Il
Kim, Min Sung
Seong, Hoon Je
Kim, Jong-Shik
Sul, Woo Jun
Characterization of a nifH-Harboring Bacterial Community in the Soil-Limited Gotjawal Forest
title Characterization of a nifH-Harboring Bacterial Community in the Soil-Limited Gotjawal Forest
title_full Characterization of a nifH-Harboring Bacterial Community in the Soil-Limited Gotjawal Forest
title_fullStr Characterization of a nifH-Harboring Bacterial Community in the Soil-Limited Gotjawal Forest
title_full_unstemmed Characterization of a nifH-Harboring Bacterial Community in the Soil-Limited Gotjawal Forest
title_short Characterization of a nifH-Harboring Bacterial Community in the Soil-Limited Gotjawal Forest
title_sort characterization of a nifh-harboring bacterial community in the soil-limited gotjawal forest
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6700220/
https://www.ncbi.nlm.nih.gov/pubmed/31456776
http://dx.doi.org/10.3389/fmicb.2019.01858
work_keys_str_mv AT leetaekwon characterizationofanifhharboringbacterialcommunityinthesoillimitedgotjawalforest
AT hanil characterizationofanifhharboringbacterialcommunityinthesoillimitedgotjawalforest
AT kimminsung characterizationofanifhharboringbacterialcommunityinthesoillimitedgotjawalforest
AT seonghoonje characterizationofanifhharboringbacterialcommunityinthesoillimitedgotjawalforest
AT kimjongshik characterizationofanifhharboringbacterialcommunityinthesoillimitedgotjawalforest
AT sulwoojun characterizationofanifhharboringbacterialcommunityinthesoillimitedgotjawalforest