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Understanding evolution in Poales: Insights from Eriocaulaceae plastome

In this study, we report the plastome of Eriocaulon decemflorum (Eriocaulaceae) and make an effort to understand the genome evolution, structural rearrangements and gene content of the order Poales by comparing it with other available plastomes. The size of complete E. decemflorum plastome is 151,67...

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Autores principales: Darshetkar, Ashwini M., Datar, Mandar N., Tamhankar, Shubhada, Li, Pan, Choudhary, Ritesh Kumar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6701780/
https://www.ncbi.nlm.nih.gov/pubmed/31430346
http://dx.doi.org/10.1371/journal.pone.0221423
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author Darshetkar, Ashwini M.
Datar, Mandar N.
Tamhankar, Shubhada
Li, Pan
Choudhary, Ritesh Kumar
author_facet Darshetkar, Ashwini M.
Datar, Mandar N.
Tamhankar, Shubhada
Li, Pan
Choudhary, Ritesh Kumar
author_sort Darshetkar, Ashwini M.
collection PubMed
description In this study, we report the plastome of Eriocaulon decemflorum (Eriocaulaceae) and make an effort to understand the genome evolution, structural rearrangements and gene content of the order Poales by comparing it with other available plastomes. The size of complete E. decemflorum plastome is 151,671 bp with an LSC (81,477bp), SSC (17,180bp) and a pair of IRs (26,507 bp). The plastome exhibits GC content of 35.8% and 134 protein-coding genes with 19 genes duplicated in the IR region. The Eriocaulaceae plastome is characterized by the presence of accD, ycf1 and ycf2 genes and presence of introns in clpP and rpoC1 genes which have been lost in the Graminid plastomes. Phylogenomic analysis based on 81 protein-coding genes placed Eriocaulaceae sister to Mayacaceae. The present study enhances our understanding of the evolution of Poales by analyzing the plastome data from the order.
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spelling pubmed-67017802019-09-04 Understanding evolution in Poales: Insights from Eriocaulaceae plastome Darshetkar, Ashwini M. Datar, Mandar N. Tamhankar, Shubhada Li, Pan Choudhary, Ritesh Kumar PLoS One Research Article In this study, we report the plastome of Eriocaulon decemflorum (Eriocaulaceae) and make an effort to understand the genome evolution, structural rearrangements and gene content of the order Poales by comparing it with other available plastomes. The size of complete E. decemflorum plastome is 151,671 bp with an LSC (81,477bp), SSC (17,180bp) and a pair of IRs (26,507 bp). The plastome exhibits GC content of 35.8% and 134 protein-coding genes with 19 genes duplicated in the IR region. The Eriocaulaceae plastome is characterized by the presence of accD, ycf1 and ycf2 genes and presence of introns in clpP and rpoC1 genes which have been lost in the Graminid plastomes. Phylogenomic analysis based on 81 protein-coding genes placed Eriocaulaceae sister to Mayacaceae. The present study enhances our understanding of the evolution of Poales by analyzing the plastome data from the order. Public Library of Science 2019-08-20 /pmc/articles/PMC6701780/ /pubmed/31430346 http://dx.doi.org/10.1371/journal.pone.0221423 Text en © 2019 Darshetkar et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Darshetkar, Ashwini M.
Datar, Mandar N.
Tamhankar, Shubhada
Li, Pan
Choudhary, Ritesh Kumar
Understanding evolution in Poales: Insights from Eriocaulaceae plastome
title Understanding evolution in Poales: Insights from Eriocaulaceae plastome
title_full Understanding evolution in Poales: Insights from Eriocaulaceae plastome
title_fullStr Understanding evolution in Poales: Insights from Eriocaulaceae plastome
title_full_unstemmed Understanding evolution in Poales: Insights from Eriocaulaceae plastome
title_short Understanding evolution in Poales: Insights from Eriocaulaceae plastome
title_sort understanding evolution in poales: insights from eriocaulaceae plastome
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6701780/
https://www.ncbi.nlm.nih.gov/pubmed/31430346
http://dx.doi.org/10.1371/journal.pone.0221423
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