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High possibility of hepatocarcinogenesis in HBV genotype C1 infected Cambodians is indicated by 340 HBV C1 full-genomes analysis from GenBank

Approximately 75% of hepatocellular carcinomas (HCC) occur in Asia; core promoter mutations are associated with HCC in HBV genotype C, the dominant genotype in Cambodia. We analyzed these mutations in Cambodian residents and compared them with HBV full genomes registered in GenBank. We investigated...

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Autores principales: Chuon, Channarena, Takahashi, Kazuaki, Matsuo, Junko, Katayama, Keiko, Yamamoto, Chikako, Ko, Ko, Hok, Sirany, Nagashima, Shintaro, Akbar, Sheikh Mohammad Fazle, Tanaka, Junko
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6704254/
https://www.ncbi.nlm.nih.gov/pubmed/31434918
http://dx.doi.org/10.1038/s41598-019-48304-z
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author Chuon, Channarena
Takahashi, Kazuaki
Matsuo, Junko
Katayama, Keiko
Yamamoto, Chikako
Ko, Ko
Hok, Sirany
Nagashima, Shintaro
Akbar, Sheikh Mohammad Fazle
Tanaka, Junko
author_facet Chuon, Channarena
Takahashi, Kazuaki
Matsuo, Junko
Katayama, Keiko
Yamamoto, Chikako
Ko, Ko
Hok, Sirany
Nagashima, Shintaro
Akbar, Sheikh Mohammad Fazle
Tanaka, Junko
author_sort Chuon, Channarena
collection PubMed
description Approximately 75% of hepatocellular carcinomas (HCC) occur in Asia; core promoter mutations are associated with HCC in HBV genotype C, the dominant genotype in Cambodia. We analyzed these mutations in Cambodian residents and compared them with HBV full genomes registered in GenBank. We investigated the characteristics of 26 full-length HBV genomes among 35 residents positive for hepatitis B surface antigen in Siem Reap province, Cambodia. Genotype C1 was dominant (92.3%, 24/26), with one case of B2 and B4 each. Multiple mutations were confirmed in 24 Cambodian C1 isolates, especially double mutation at A1762T/G1764A in 18 isolates (75.0%), and combination mutation at C1653T and/or T1753V and A1762T/G1764A in 14 isolates (58.3%). In phylogenetic analysis, 16 of 24 isolates were located in the cluster with Laos, Thailand, and Malaysia. In 340 GenBank-registered C1 strains, 113 (33.2%) had combination mutation amongst which 16.5%, 34.2%, and 95.2% were found in ASC, chronic hepatitis, and liver cirrhosis (LC)/HCC respectively (P < 0. 001). Mutations were abundantly found in 24 Cambodian C1 isolates, and 340 C1 strains from GenBank showed mutation in genotype C1 brings high possibility of LC/HCC occurrence. Therefore, we suggest that Cambodian people infected with HBV genotype C1 have high possibility of hepatocarcinogenesis.
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spelling pubmed-67042542019-08-23 High possibility of hepatocarcinogenesis in HBV genotype C1 infected Cambodians is indicated by 340 HBV C1 full-genomes analysis from GenBank Chuon, Channarena Takahashi, Kazuaki Matsuo, Junko Katayama, Keiko Yamamoto, Chikako Ko, Ko Hok, Sirany Nagashima, Shintaro Akbar, Sheikh Mohammad Fazle Tanaka, Junko Sci Rep Article Approximately 75% of hepatocellular carcinomas (HCC) occur in Asia; core promoter mutations are associated with HCC in HBV genotype C, the dominant genotype in Cambodia. We analyzed these mutations in Cambodian residents and compared them with HBV full genomes registered in GenBank. We investigated the characteristics of 26 full-length HBV genomes among 35 residents positive for hepatitis B surface antigen in Siem Reap province, Cambodia. Genotype C1 was dominant (92.3%, 24/26), with one case of B2 and B4 each. Multiple mutations were confirmed in 24 Cambodian C1 isolates, especially double mutation at A1762T/G1764A in 18 isolates (75.0%), and combination mutation at C1653T and/or T1753V and A1762T/G1764A in 14 isolates (58.3%). In phylogenetic analysis, 16 of 24 isolates were located in the cluster with Laos, Thailand, and Malaysia. In 340 GenBank-registered C1 strains, 113 (33.2%) had combination mutation amongst which 16.5%, 34.2%, and 95.2% were found in ASC, chronic hepatitis, and liver cirrhosis (LC)/HCC respectively (P < 0. 001). Mutations were abundantly found in 24 Cambodian C1 isolates, and 340 C1 strains from GenBank showed mutation in genotype C1 brings high possibility of LC/HCC occurrence. Therefore, we suggest that Cambodian people infected with HBV genotype C1 have high possibility of hepatocarcinogenesis. Nature Publishing Group UK 2019-08-21 /pmc/articles/PMC6704254/ /pubmed/31434918 http://dx.doi.org/10.1038/s41598-019-48304-z Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Chuon, Channarena
Takahashi, Kazuaki
Matsuo, Junko
Katayama, Keiko
Yamamoto, Chikako
Ko, Ko
Hok, Sirany
Nagashima, Shintaro
Akbar, Sheikh Mohammad Fazle
Tanaka, Junko
High possibility of hepatocarcinogenesis in HBV genotype C1 infected Cambodians is indicated by 340 HBV C1 full-genomes analysis from GenBank
title High possibility of hepatocarcinogenesis in HBV genotype C1 infected Cambodians is indicated by 340 HBV C1 full-genomes analysis from GenBank
title_full High possibility of hepatocarcinogenesis in HBV genotype C1 infected Cambodians is indicated by 340 HBV C1 full-genomes analysis from GenBank
title_fullStr High possibility of hepatocarcinogenesis in HBV genotype C1 infected Cambodians is indicated by 340 HBV C1 full-genomes analysis from GenBank
title_full_unstemmed High possibility of hepatocarcinogenesis in HBV genotype C1 infected Cambodians is indicated by 340 HBV C1 full-genomes analysis from GenBank
title_short High possibility of hepatocarcinogenesis in HBV genotype C1 infected Cambodians is indicated by 340 HBV C1 full-genomes analysis from GenBank
title_sort high possibility of hepatocarcinogenesis in hbv genotype c1 infected cambodians is indicated by 340 hbv c1 full-genomes analysis from genbank
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6704254/
https://www.ncbi.nlm.nih.gov/pubmed/31434918
http://dx.doi.org/10.1038/s41598-019-48304-z
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