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Scoring colorectal cancer risk with an artificial neural network based on self-reportable personal health data

Colorectal cancer (CRC) is third in prevalence and mortality among all cancers in the US. Currently, the United States Preventative Services Task Force (USPSTF) recommends anyone ages 50–75 and/or with a family history to be screened for CRC. To improve screening specificity and sensitivity, we have...

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Autores principales: Nartowt, Bradley J., Hart, Gregory R., Roffman, David A., Llor, Xavier, Ali, Issa, Muhammad, Wazir, Liang, Ying, Deng, Jun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6705772/
https://www.ncbi.nlm.nih.gov/pubmed/31437221
http://dx.doi.org/10.1371/journal.pone.0221421
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author Nartowt, Bradley J.
Hart, Gregory R.
Roffman, David A.
Llor, Xavier
Ali, Issa
Muhammad, Wazir
Liang, Ying
Deng, Jun
author_facet Nartowt, Bradley J.
Hart, Gregory R.
Roffman, David A.
Llor, Xavier
Ali, Issa
Muhammad, Wazir
Liang, Ying
Deng, Jun
author_sort Nartowt, Bradley J.
collection PubMed
description Colorectal cancer (CRC) is third in prevalence and mortality among all cancers in the US. Currently, the United States Preventative Services Task Force (USPSTF) recommends anyone ages 50–75 and/or with a family history to be screened for CRC. To improve screening specificity and sensitivity, we have built an artificial neural network (ANN) trained on 12 to 14 categories of personal health data from the National Health Interview Survey (NHIS). Years 1997–2016 of the NHIS contain 583,770 respondents who had never received a diagnosis of any cancer and 1409 who had received a diagnosis of CRC within 4 years of taking the survey. The trained ANN has sensitivity of 0.57 ± 0.03, specificity of 0.89 ± 0.02, positive predictive value of 0.0075 ± 0.0003, negative predictive value of 0.999 ± 0.001, and concordance of 0.80 ± 0.05 per the guidelines of Transparent Reporting of Multivariable Prediction Model for Individual Prognosis or Diagnosis (TRIPOD) level 2a, comparable to current risk-scoring methods. To demonstrate clinical applicability, both USPSTF guidelines and the trained ANN are used to stratify respondents to the 2017 NHIS into low-, medium- and high-risk categories (TRIPOD levels 4 and 2b, respectively). The number of CRC respondents misclassified as low risk is decreased from 35% by screening guidelines to 5% by ANN (in 60 cases). The number of non-CRC respondents misclassified as high risk is decreased from 53% by screening guidelines to 6% by ANN (in 25,457 cases). Our results demonstrate a robustly-tested method of stratifying CRC risk that is non-invasive, cost-effective, and easy to implement publicly.
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spelling pubmed-67057722019-09-04 Scoring colorectal cancer risk with an artificial neural network based on self-reportable personal health data Nartowt, Bradley J. Hart, Gregory R. Roffman, David A. Llor, Xavier Ali, Issa Muhammad, Wazir Liang, Ying Deng, Jun PLoS One Research Article Colorectal cancer (CRC) is third in prevalence and mortality among all cancers in the US. Currently, the United States Preventative Services Task Force (USPSTF) recommends anyone ages 50–75 and/or with a family history to be screened for CRC. To improve screening specificity and sensitivity, we have built an artificial neural network (ANN) trained on 12 to 14 categories of personal health data from the National Health Interview Survey (NHIS). Years 1997–2016 of the NHIS contain 583,770 respondents who had never received a diagnosis of any cancer and 1409 who had received a diagnosis of CRC within 4 years of taking the survey. The trained ANN has sensitivity of 0.57 ± 0.03, specificity of 0.89 ± 0.02, positive predictive value of 0.0075 ± 0.0003, negative predictive value of 0.999 ± 0.001, and concordance of 0.80 ± 0.05 per the guidelines of Transparent Reporting of Multivariable Prediction Model for Individual Prognosis or Diagnosis (TRIPOD) level 2a, comparable to current risk-scoring methods. To demonstrate clinical applicability, both USPSTF guidelines and the trained ANN are used to stratify respondents to the 2017 NHIS into low-, medium- and high-risk categories (TRIPOD levels 4 and 2b, respectively). The number of CRC respondents misclassified as low risk is decreased from 35% by screening guidelines to 5% by ANN (in 60 cases). The number of non-CRC respondents misclassified as high risk is decreased from 53% by screening guidelines to 6% by ANN (in 25,457 cases). Our results demonstrate a robustly-tested method of stratifying CRC risk that is non-invasive, cost-effective, and easy to implement publicly. Public Library of Science 2019-08-22 /pmc/articles/PMC6705772/ /pubmed/31437221 http://dx.doi.org/10.1371/journal.pone.0221421 Text en © 2019 Nartowt et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Nartowt, Bradley J.
Hart, Gregory R.
Roffman, David A.
Llor, Xavier
Ali, Issa
Muhammad, Wazir
Liang, Ying
Deng, Jun
Scoring colorectal cancer risk with an artificial neural network based on self-reportable personal health data
title Scoring colorectal cancer risk with an artificial neural network based on self-reportable personal health data
title_full Scoring colorectal cancer risk with an artificial neural network based on self-reportable personal health data
title_fullStr Scoring colorectal cancer risk with an artificial neural network based on self-reportable personal health data
title_full_unstemmed Scoring colorectal cancer risk with an artificial neural network based on self-reportable personal health data
title_short Scoring colorectal cancer risk with an artificial neural network based on self-reportable personal health data
title_sort scoring colorectal cancer risk with an artificial neural network based on self-reportable personal health data
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6705772/
https://www.ncbi.nlm.nih.gov/pubmed/31437221
http://dx.doi.org/10.1371/journal.pone.0221421
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