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Graph-to-signal transformation based classification of functional connectivity brain networks
Complex network theory has been successful at unveiling the topology of the brain and showing alterations to the network structure due to brain disease, cognitive function and behavior. Functional connectivity networks (FCNs) represent different brain regions as the nodes and the connectivity betwee...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6705775/ https://www.ncbi.nlm.nih.gov/pubmed/31437168 http://dx.doi.org/10.1371/journal.pone.0212470 |
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author | Munia, Tamanna Tabassum Khan Aviyente, Selin |
author_facet | Munia, Tamanna Tabassum Khan Aviyente, Selin |
author_sort | Munia, Tamanna Tabassum Khan |
collection | PubMed |
description | Complex network theory has been successful at unveiling the topology of the brain and showing alterations to the network structure due to brain disease, cognitive function and behavior. Functional connectivity networks (FCNs) represent different brain regions as the nodes and the connectivity between them as the edges of a graph. Graph theoretic measures provide a way to extract features from these networks enabling subsequent characterization and discrimination of networks across conditions. However, these measures are constrained mostly to binary networks and highly dependent on the network size. In this paper, we propose a novel graph-to-signal transform that overcomes these shortcomings to extract features from functional connectivity networks. The proposed transformation is based on classical multidimensional scaling (CMDS) theory and transforms a graph into signals such that the Euclidean distance between the nodes of the network is preserved. In this paper, we propose to use the resistance distance matrix for transforming weighted functional connectivity networks into signals. Our results illustrate how well-known network structures transform into distinct signals using the proposed graph-to-signal transformation. We then compute well-known signal features on the extracted graph signals to discriminate between FCNs constructed across different experimental conditions. Based on our results, the signals obtained from the graph-to-signal transformation allow for the characterization of functional connectivity networks, and the corresponding features are more discriminative compared to graph theoretic measures. |
format | Online Article Text |
id | pubmed-6705775 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-67057752019-09-04 Graph-to-signal transformation based classification of functional connectivity brain networks Munia, Tamanna Tabassum Khan Aviyente, Selin PLoS One Research Article Complex network theory has been successful at unveiling the topology of the brain and showing alterations to the network structure due to brain disease, cognitive function and behavior. Functional connectivity networks (FCNs) represent different brain regions as the nodes and the connectivity between them as the edges of a graph. Graph theoretic measures provide a way to extract features from these networks enabling subsequent characterization and discrimination of networks across conditions. However, these measures are constrained mostly to binary networks and highly dependent on the network size. In this paper, we propose a novel graph-to-signal transform that overcomes these shortcomings to extract features from functional connectivity networks. The proposed transformation is based on classical multidimensional scaling (CMDS) theory and transforms a graph into signals such that the Euclidean distance between the nodes of the network is preserved. In this paper, we propose to use the resistance distance matrix for transforming weighted functional connectivity networks into signals. Our results illustrate how well-known network structures transform into distinct signals using the proposed graph-to-signal transformation. We then compute well-known signal features on the extracted graph signals to discriminate between FCNs constructed across different experimental conditions. Based on our results, the signals obtained from the graph-to-signal transformation allow for the characterization of functional connectivity networks, and the corresponding features are more discriminative compared to graph theoretic measures. Public Library of Science 2019-08-22 /pmc/articles/PMC6705775/ /pubmed/31437168 http://dx.doi.org/10.1371/journal.pone.0212470 Text en © 2019 Munia, Aviyente http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Munia, Tamanna Tabassum Khan Aviyente, Selin Graph-to-signal transformation based classification of functional connectivity brain networks |
title | Graph-to-signal transformation based classification of functional connectivity brain networks |
title_full | Graph-to-signal transformation based classification of functional connectivity brain networks |
title_fullStr | Graph-to-signal transformation based classification of functional connectivity brain networks |
title_full_unstemmed | Graph-to-signal transformation based classification of functional connectivity brain networks |
title_short | Graph-to-signal transformation based classification of functional connectivity brain networks |
title_sort | graph-to-signal transformation based classification of functional connectivity brain networks |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6705775/ https://www.ncbi.nlm.nih.gov/pubmed/31437168 http://dx.doi.org/10.1371/journal.pone.0212470 |
work_keys_str_mv | AT muniatamannatabassumkhan graphtosignaltransformationbasedclassificationoffunctionalconnectivitybrainnetworks AT aviyenteselin graphtosignaltransformationbasedclassificationoffunctionalconnectivitybrainnetworks |