Cargando…

Graph-to-signal transformation based classification of functional connectivity brain networks

Complex network theory has been successful at unveiling the topology of the brain and showing alterations to the network structure due to brain disease, cognitive function and behavior. Functional connectivity networks (FCNs) represent different brain regions as the nodes and the connectivity betwee...

Descripción completa

Detalles Bibliográficos
Autores principales: Munia, Tamanna Tabassum Khan, Aviyente, Selin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6705775/
https://www.ncbi.nlm.nih.gov/pubmed/31437168
http://dx.doi.org/10.1371/journal.pone.0212470
_version_ 1783445623187439616
author Munia, Tamanna Tabassum Khan
Aviyente, Selin
author_facet Munia, Tamanna Tabassum Khan
Aviyente, Selin
author_sort Munia, Tamanna Tabassum Khan
collection PubMed
description Complex network theory has been successful at unveiling the topology of the brain and showing alterations to the network structure due to brain disease, cognitive function and behavior. Functional connectivity networks (FCNs) represent different brain regions as the nodes and the connectivity between them as the edges of a graph. Graph theoretic measures provide a way to extract features from these networks enabling subsequent characterization and discrimination of networks across conditions. However, these measures are constrained mostly to binary networks and highly dependent on the network size. In this paper, we propose a novel graph-to-signal transform that overcomes these shortcomings to extract features from functional connectivity networks. The proposed transformation is based on classical multidimensional scaling (CMDS) theory and transforms a graph into signals such that the Euclidean distance between the nodes of the network is preserved. In this paper, we propose to use the resistance distance matrix for transforming weighted functional connectivity networks into signals. Our results illustrate how well-known network structures transform into distinct signals using the proposed graph-to-signal transformation. We then compute well-known signal features on the extracted graph signals to discriminate between FCNs constructed across different experimental conditions. Based on our results, the signals obtained from the graph-to-signal transformation allow for the characterization of functional connectivity networks, and the corresponding features are more discriminative compared to graph theoretic measures.
format Online
Article
Text
id pubmed-6705775
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-67057752019-09-04 Graph-to-signal transformation based classification of functional connectivity brain networks Munia, Tamanna Tabassum Khan Aviyente, Selin PLoS One Research Article Complex network theory has been successful at unveiling the topology of the brain and showing alterations to the network structure due to brain disease, cognitive function and behavior. Functional connectivity networks (FCNs) represent different brain regions as the nodes and the connectivity between them as the edges of a graph. Graph theoretic measures provide a way to extract features from these networks enabling subsequent characterization and discrimination of networks across conditions. However, these measures are constrained mostly to binary networks and highly dependent on the network size. In this paper, we propose a novel graph-to-signal transform that overcomes these shortcomings to extract features from functional connectivity networks. The proposed transformation is based on classical multidimensional scaling (CMDS) theory and transforms a graph into signals such that the Euclidean distance between the nodes of the network is preserved. In this paper, we propose to use the resistance distance matrix for transforming weighted functional connectivity networks into signals. Our results illustrate how well-known network structures transform into distinct signals using the proposed graph-to-signal transformation. We then compute well-known signal features on the extracted graph signals to discriminate between FCNs constructed across different experimental conditions. Based on our results, the signals obtained from the graph-to-signal transformation allow for the characterization of functional connectivity networks, and the corresponding features are more discriminative compared to graph theoretic measures. Public Library of Science 2019-08-22 /pmc/articles/PMC6705775/ /pubmed/31437168 http://dx.doi.org/10.1371/journal.pone.0212470 Text en © 2019 Munia, Aviyente http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Munia, Tamanna Tabassum Khan
Aviyente, Selin
Graph-to-signal transformation based classification of functional connectivity brain networks
title Graph-to-signal transformation based classification of functional connectivity brain networks
title_full Graph-to-signal transformation based classification of functional connectivity brain networks
title_fullStr Graph-to-signal transformation based classification of functional connectivity brain networks
title_full_unstemmed Graph-to-signal transformation based classification of functional connectivity brain networks
title_short Graph-to-signal transformation based classification of functional connectivity brain networks
title_sort graph-to-signal transformation based classification of functional connectivity brain networks
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6705775/
https://www.ncbi.nlm.nih.gov/pubmed/31437168
http://dx.doi.org/10.1371/journal.pone.0212470
work_keys_str_mv AT muniatamannatabassumkhan graphtosignaltransformationbasedclassificationoffunctionalconnectivitybrainnetworks
AT aviyenteselin graphtosignaltransformationbasedclassificationoffunctionalconnectivitybrainnetworks