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An information network flow approach for measuring functional connectivity and predicting behavior

INTRODUCTION: Connectome‐based predictive modeling (CPM) is a recently developed machine‐learning‐based framework to predict individual differences in behavior from functional brain connectivity (FC). In these models, FC was operationalized as Pearson's correlation between brain regions’ fMRI t...

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Autores principales: Kumar, Sreejan, Yoo, Kwangsun, Rosenberg, Monica D., Scheinost, Dustin, Constable, R. Todd, Zhang, Sheng, Li, Chiang‐Shan R., Chun, Marvin M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6710195/
https://www.ncbi.nlm.nih.gov/pubmed/31286688
http://dx.doi.org/10.1002/brb3.1346
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author Kumar, Sreejan
Yoo, Kwangsun
Rosenberg, Monica D.
Scheinost, Dustin
Constable, R. Todd
Zhang, Sheng
Li, Chiang‐Shan R.
Chun, Marvin M.
author_facet Kumar, Sreejan
Yoo, Kwangsun
Rosenberg, Monica D.
Scheinost, Dustin
Constable, R. Todd
Zhang, Sheng
Li, Chiang‐Shan R.
Chun, Marvin M.
author_sort Kumar, Sreejan
collection PubMed
description INTRODUCTION: Connectome‐based predictive modeling (CPM) is a recently developed machine‐learning‐based framework to predict individual differences in behavior from functional brain connectivity (FC). In these models, FC was operationalized as Pearson's correlation between brain regions’ fMRI time courses. However, Pearson's correlation is limited since it only captures linear relationships. We developed a more generalized metric of FC based on information flow. This measure represents FC by abstracting the brain as a flow network of nodes that send bits of information to each other, where bits are quantified through an information theory statistic called transfer entropy. METHODS: With a sample of individuals performing a sustained attention task and resting during functional magnetic resonance imaging (fMRI) (n = 25), we use the CPM framework to build machine‐learning models that predict attention from FC patterns measured with information flow. Models trained on n − 1 participants’ task‐based patterns were applied to an unseen individual's resting‐state pattern to predict task performance. For further validation, we applied our model to two independent datasets that included resting‐state fMRI data and a measure of attention (Attention Network Task performance [n = 41] and stop‐signal task performance [n = 72]). RESULTS: Our model significantly predicted individual differences in attention task performance across three different datasets. CONCLUSIONS: Information flow may be a useful complement to Pearson's correlation as a measure of FC because of its advantages for nonlinear analysis and network structure characterization.
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spelling pubmed-67101952019-08-28 An information network flow approach for measuring functional connectivity and predicting behavior Kumar, Sreejan Yoo, Kwangsun Rosenberg, Monica D. Scheinost, Dustin Constable, R. Todd Zhang, Sheng Li, Chiang‐Shan R. Chun, Marvin M. Brain Behav Original Research INTRODUCTION: Connectome‐based predictive modeling (CPM) is a recently developed machine‐learning‐based framework to predict individual differences in behavior from functional brain connectivity (FC). In these models, FC was operationalized as Pearson's correlation between brain regions’ fMRI time courses. However, Pearson's correlation is limited since it only captures linear relationships. We developed a more generalized metric of FC based on information flow. This measure represents FC by abstracting the brain as a flow network of nodes that send bits of information to each other, where bits are quantified through an information theory statistic called transfer entropy. METHODS: With a sample of individuals performing a sustained attention task and resting during functional magnetic resonance imaging (fMRI) (n = 25), we use the CPM framework to build machine‐learning models that predict attention from FC patterns measured with information flow. Models trained on n − 1 participants’ task‐based patterns were applied to an unseen individual's resting‐state pattern to predict task performance. For further validation, we applied our model to two independent datasets that included resting‐state fMRI data and a measure of attention (Attention Network Task performance [n = 41] and stop‐signal task performance [n = 72]). RESULTS: Our model significantly predicted individual differences in attention task performance across three different datasets. CONCLUSIONS: Information flow may be a useful complement to Pearson's correlation as a measure of FC because of its advantages for nonlinear analysis and network structure characterization. John Wiley and Sons Inc. 2019-07-09 /pmc/articles/PMC6710195/ /pubmed/31286688 http://dx.doi.org/10.1002/brb3.1346 Text en © 2019 The Authors. Brain and Behavior published by Wiley Periodicals, Inc. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Kumar, Sreejan
Yoo, Kwangsun
Rosenberg, Monica D.
Scheinost, Dustin
Constable, R. Todd
Zhang, Sheng
Li, Chiang‐Shan R.
Chun, Marvin M.
An information network flow approach for measuring functional connectivity and predicting behavior
title An information network flow approach for measuring functional connectivity and predicting behavior
title_full An information network flow approach for measuring functional connectivity and predicting behavior
title_fullStr An information network flow approach for measuring functional connectivity and predicting behavior
title_full_unstemmed An information network flow approach for measuring functional connectivity and predicting behavior
title_short An information network flow approach for measuring functional connectivity and predicting behavior
title_sort information network flow approach for measuring functional connectivity and predicting behavior
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6710195/
https://www.ncbi.nlm.nih.gov/pubmed/31286688
http://dx.doi.org/10.1002/brb3.1346
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