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An information network flow approach for measuring functional connectivity and predicting behavior
INTRODUCTION: Connectome‐based predictive modeling (CPM) is a recently developed machine‐learning‐based framework to predict individual differences in behavior from functional brain connectivity (FC). In these models, FC was operationalized as Pearson's correlation between brain regions’ fMRI t...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6710195/ https://www.ncbi.nlm.nih.gov/pubmed/31286688 http://dx.doi.org/10.1002/brb3.1346 |
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author | Kumar, Sreejan Yoo, Kwangsun Rosenberg, Monica D. Scheinost, Dustin Constable, R. Todd Zhang, Sheng Li, Chiang‐Shan R. Chun, Marvin M. |
author_facet | Kumar, Sreejan Yoo, Kwangsun Rosenberg, Monica D. Scheinost, Dustin Constable, R. Todd Zhang, Sheng Li, Chiang‐Shan R. Chun, Marvin M. |
author_sort | Kumar, Sreejan |
collection | PubMed |
description | INTRODUCTION: Connectome‐based predictive modeling (CPM) is a recently developed machine‐learning‐based framework to predict individual differences in behavior from functional brain connectivity (FC). In these models, FC was operationalized as Pearson's correlation between brain regions’ fMRI time courses. However, Pearson's correlation is limited since it only captures linear relationships. We developed a more generalized metric of FC based on information flow. This measure represents FC by abstracting the brain as a flow network of nodes that send bits of information to each other, where bits are quantified through an information theory statistic called transfer entropy. METHODS: With a sample of individuals performing a sustained attention task and resting during functional magnetic resonance imaging (fMRI) (n = 25), we use the CPM framework to build machine‐learning models that predict attention from FC patterns measured with information flow. Models trained on n − 1 participants’ task‐based patterns were applied to an unseen individual's resting‐state pattern to predict task performance. For further validation, we applied our model to two independent datasets that included resting‐state fMRI data and a measure of attention (Attention Network Task performance [n = 41] and stop‐signal task performance [n = 72]). RESULTS: Our model significantly predicted individual differences in attention task performance across three different datasets. CONCLUSIONS: Information flow may be a useful complement to Pearson's correlation as a measure of FC because of its advantages for nonlinear analysis and network structure characterization. |
format | Online Article Text |
id | pubmed-6710195 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-67101952019-08-28 An information network flow approach for measuring functional connectivity and predicting behavior Kumar, Sreejan Yoo, Kwangsun Rosenberg, Monica D. Scheinost, Dustin Constable, R. Todd Zhang, Sheng Li, Chiang‐Shan R. Chun, Marvin M. Brain Behav Original Research INTRODUCTION: Connectome‐based predictive modeling (CPM) is a recently developed machine‐learning‐based framework to predict individual differences in behavior from functional brain connectivity (FC). In these models, FC was operationalized as Pearson's correlation between brain regions’ fMRI time courses. However, Pearson's correlation is limited since it only captures linear relationships. We developed a more generalized metric of FC based on information flow. This measure represents FC by abstracting the brain as a flow network of nodes that send bits of information to each other, where bits are quantified through an information theory statistic called transfer entropy. METHODS: With a sample of individuals performing a sustained attention task and resting during functional magnetic resonance imaging (fMRI) (n = 25), we use the CPM framework to build machine‐learning models that predict attention from FC patterns measured with information flow. Models trained on n − 1 participants’ task‐based patterns were applied to an unseen individual's resting‐state pattern to predict task performance. For further validation, we applied our model to two independent datasets that included resting‐state fMRI data and a measure of attention (Attention Network Task performance [n = 41] and stop‐signal task performance [n = 72]). RESULTS: Our model significantly predicted individual differences in attention task performance across three different datasets. CONCLUSIONS: Information flow may be a useful complement to Pearson's correlation as a measure of FC because of its advantages for nonlinear analysis and network structure characterization. John Wiley and Sons Inc. 2019-07-09 /pmc/articles/PMC6710195/ /pubmed/31286688 http://dx.doi.org/10.1002/brb3.1346 Text en © 2019 The Authors. Brain and Behavior published by Wiley Periodicals, Inc. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Research Kumar, Sreejan Yoo, Kwangsun Rosenberg, Monica D. Scheinost, Dustin Constable, R. Todd Zhang, Sheng Li, Chiang‐Shan R. Chun, Marvin M. An information network flow approach for measuring functional connectivity and predicting behavior |
title | An information network flow approach for measuring functional connectivity and predicting behavior |
title_full | An information network flow approach for measuring functional connectivity and predicting behavior |
title_fullStr | An information network flow approach for measuring functional connectivity and predicting behavior |
title_full_unstemmed | An information network flow approach for measuring functional connectivity and predicting behavior |
title_short | An information network flow approach for measuring functional connectivity and predicting behavior |
title_sort | information network flow approach for measuring functional connectivity and predicting behavior |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6710195/ https://www.ncbi.nlm.nih.gov/pubmed/31286688 http://dx.doi.org/10.1002/brb3.1346 |
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