Cargando…

A born‐digital field‐to‐database solution for collections‐based research using collNotes and collBook

PREMISE: The digitization of natural history collections includes transcribing specimen label data into standardized formats. Born‐digital specimen data initially gathered in digital formats do not need to be transcribed, enabling their efficient integration into digitized collections. Modernizing f...

Descripción completa

Detalles Bibliográficos
Autores principales: Powell, Caleb, Motley, Jacob, Qin, Hong, Shaw, Joey
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6711348/
https://www.ncbi.nlm.nih.gov/pubmed/31467807
http://dx.doi.org/10.1002/aps3.11284
_version_ 1783446503038124032
author Powell, Caleb
Motley, Jacob
Qin, Hong
Shaw, Joey
author_facet Powell, Caleb
Motley, Jacob
Qin, Hong
Shaw, Joey
author_sort Powell, Caleb
collection PubMed
description PREMISE: The digitization of natural history collections includes transcribing specimen label data into standardized formats. Born‐digital specimen data initially gathered in digital formats do not need to be transcribed, enabling their efficient integration into digitized collections. Modernizing field collection methods for born‐digital workflows requires the development of new tools and processes. METHODS AND RESULTS: collNotes, a mobile application, was developed for Android and iOS to supplement traditional field journals. Designed for efficiency in the field, collNotes avoids redundant data entries and does not require cellular service. collBook, a companion desktop application, refines field notes into database‐ready formats and produces specimen labels. CONCLUSIONS: collNotes and collBook can be used in combination as a field‐to‐database solution for gathering born‐digital voucher specimen data for plants and fungi. Both programs are open source and use common file types simplifying either program's integration into existing workflows.
format Online
Article
Text
id pubmed-6711348
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-67113482019-08-29 A born‐digital field‐to‐database solution for collections‐based research using collNotes and collBook Powell, Caleb Motley, Jacob Qin, Hong Shaw, Joey Appl Plant Sci Software Note PREMISE: The digitization of natural history collections includes transcribing specimen label data into standardized formats. Born‐digital specimen data initially gathered in digital formats do not need to be transcribed, enabling their efficient integration into digitized collections. Modernizing field collection methods for born‐digital workflows requires the development of new tools and processes. METHODS AND RESULTS: collNotes, a mobile application, was developed for Android and iOS to supplement traditional field journals. Designed for efficiency in the field, collNotes avoids redundant data entries and does not require cellular service. collBook, a companion desktop application, refines field notes into database‐ready formats and produces specimen labels. CONCLUSIONS: collNotes and collBook can be used in combination as a field‐to‐database solution for gathering born‐digital voucher specimen data for plants and fungi. Both programs are open source and use common file types simplifying either program's integration into existing workflows. John Wiley and Sons Inc. 2019-08-23 /pmc/articles/PMC6711348/ /pubmed/31467807 http://dx.doi.org/10.1002/aps3.11284 Text en © 2019 Powell et al. Applications in Plant Sciences is published by Wiley Periodicals, Inc. on behalf of the Botanical Society of America This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Software Note
Powell, Caleb
Motley, Jacob
Qin, Hong
Shaw, Joey
A born‐digital field‐to‐database solution for collections‐based research using collNotes and collBook
title A born‐digital field‐to‐database solution for collections‐based research using collNotes and collBook
title_full A born‐digital field‐to‐database solution for collections‐based research using collNotes and collBook
title_fullStr A born‐digital field‐to‐database solution for collections‐based research using collNotes and collBook
title_full_unstemmed A born‐digital field‐to‐database solution for collections‐based research using collNotes and collBook
title_short A born‐digital field‐to‐database solution for collections‐based research using collNotes and collBook
title_sort born‐digital field‐to‐database solution for collections‐based research using collnotes and collbook
topic Software Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6711348/
https://www.ncbi.nlm.nih.gov/pubmed/31467807
http://dx.doi.org/10.1002/aps3.11284
work_keys_str_mv AT powellcaleb aborndigitalfieldtodatabasesolutionforcollectionsbasedresearchusingcollnotesandcollbook
AT motleyjacob aborndigitalfieldtodatabasesolutionforcollectionsbasedresearchusingcollnotesandcollbook
AT qinhong aborndigitalfieldtodatabasesolutionforcollectionsbasedresearchusingcollnotesandcollbook
AT shawjoey aborndigitalfieldtodatabasesolutionforcollectionsbasedresearchusingcollnotesandcollbook
AT powellcaleb borndigitalfieldtodatabasesolutionforcollectionsbasedresearchusingcollnotesandcollbook
AT motleyjacob borndigitalfieldtodatabasesolutionforcollectionsbasedresearchusingcollnotesandcollbook
AT qinhong borndigitalfieldtodatabasesolutionforcollectionsbasedresearchusingcollnotesandcollbook
AT shawjoey borndigitalfieldtodatabasesolutionforcollectionsbasedresearchusingcollnotesandcollbook