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Application of Bayesian predictive probability for interim futility analysis in single-arm phase II trial
BACKGROUND: Bayesian predictive probability design, with a binary endpoint, is gaining attention for the phase II trial due to its innovative strategy. To make the Bayesian design more accessible, we elucidate this Bayesian approach with a R package to streamline a statistical plan, so biostatistici...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
AME Publishing Company
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6711387/ https://www.ncbi.nlm.nih.gov/pubmed/31456910 http://dx.doi.org/10.21037/tcr.2019.05.17 |
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author | Chen, Dung-Tsa Schell, Michael J. Fulp, William J. Pettersson, Fredrik Kim, Sungjune Gray, Jhanelle E. Haura, Eric B. |
author_facet | Chen, Dung-Tsa Schell, Michael J. Fulp, William J. Pettersson, Fredrik Kim, Sungjune Gray, Jhanelle E. Haura, Eric B. |
author_sort | Chen, Dung-Tsa |
collection | PubMed |
description | BACKGROUND: Bayesian predictive probability design, with a binary endpoint, is gaining attention for the phase II trial due to its innovative strategy. To make the Bayesian design more accessible, we elucidate this Bayesian approach with a R package to streamline a statistical plan, so biostatisticians and clinicians can easily integrate the design into clinical trial. METHODS: We utilize a Bayesian framework using Bayesian posterior probability and predictive probability to build a R package and develop a statistical plan for the trial design. With pre-defined sample sizes, the approach employs the posterior probability with a threshold to calculate the minimum number of responders needed at end of the study to claim efficacy. Then the predictive probability is applied to evaluate future success at interim stages and form stopping rule at each stage. RESULTS: An R package, ‘BayesianPredictiveFutility’, with associated graphical interface is developed for easy utilization of the trial design. The statistical tool generates a professional statistical plan with comprehensive results including a summary, details of study design, a series of tables and figures from stopping boundary for futility, Bayesian predictive probability, performance [probability of early termination (PET), type I error, and power], PET at each interim analysis, sensitivity analysis for predictive probability, posterior probability, sample size, and beta prior distribution. The statistical plan presents the methodology in a readable language fashion while preserving rigorous statistical arguments. The output formats (Word or PDF) are available to communicate with physicians or to be incorporated in the trial protocol. Two clinical trials in lung cancer are used to demonstrate its usefulness. CONCLUSIONS: Bayesian predictive probability method presents a flexible design in clinical trial. The statistical tool brings an added value to broaden the application. |
format | Online Article Text |
id | pubmed-6711387 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | AME Publishing Company |
record_format | MEDLINE/PubMed |
spelling | pubmed-67113872019-08-27 Application of Bayesian predictive probability for interim futility analysis in single-arm phase II trial Chen, Dung-Tsa Schell, Michael J. Fulp, William J. Pettersson, Fredrik Kim, Sungjune Gray, Jhanelle E. Haura, Eric B. Transl Cancer Res Original Article BACKGROUND: Bayesian predictive probability design, with a binary endpoint, is gaining attention for the phase II trial due to its innovative strategy. To make the Bayesian design more accessible, we elucidate this Bayesian approach with a R package to streamline a statistical plan, so biostatisticians and clinicians can easily integrate the design into clinical trial. METHODS: We utilize a Bayesian framework using Bayesian posterior probability and predictive probability to build a R package and develop a statistical plan for the trial design. With pre-defined sample sizes, the approach employs the posterior probability with a threshold to calculate the minimum number of responders needed at end of the study to claim efficacy. Then the predictive probability is applied to evaluate future success at interim stages and form stopping rule at each stage. RESULTS: An R package, ‘BayesianPredictiveFutility’, with associated graphical interface is developed for easy utilization of the trial design. The statistical tool generates a professional statistical plan with comprehensive results including a summary, details of study design, a series of tables and figures from stopping boundary for futility, Bayesian predictive probability, performance [probability of early termination (PET), type I error, and power], PET at each interim analysis, sensitivity analysis for predictive probability, posterior probability, sample size, and beta prior distribution. The statistical plan presents the methodology in a readable language fashion while preserving rigorous statistical arguments. The output formats (Word or PDF) are available to communicate with physicians or to be incorporated in the trial protocol. Two clinical trials in lung cancer are used to demonstrate its usefulness. CONCLUSIONS: Bayesian predictive probability method presents a flexible design in clinical trial. The statistical tool brings an added value to broaden the application. AME Publishing Company 2019-07 /pmc/articles/PMC6711387/ /pubmed/31456910 http://dx.doi.org/10.21037/tcr.2019.05.17 Text en 2019 Translational Cancer Research. All rights reserved. https://creativecommons.org/licenses/by-nc-nd/4.0/Open Access Statement: This is an Open Access article distributed in accordance with the Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International License (CC BY-NC-ND 4.0), which permits the non-commercial replication and distribution of the article with the strict proviso that no changes or edits are made and the original work is properly cited (including links to both the formal publication through the relevant DOI and the license). See: https://creativecommons.org/licenses/by-nc-nd/4.0/. |
spellingShingle | Original Article Chen, Dung-Tsa Schell, Michael J. Fulp, William J. Pettersson, Fredrik Kim, Sungjune Gray, Jhanelle E. Haura, Eric B. Application of Bayesian predictive probability for interim futility analysis in single-arm phase II trial |
title | Application of Bayesian predictive probability for interim futility analysis in single-arm phase II trial |
title_full | Application of Bayesian predictive probability for interim futility analysis in single-arm phase II trial |
title_fullStr | Application of Bayesian predictive probability for interim futility analysis in single-arm phase II trial |
title_full_unstemmed | Application of Bayesian predictive probability for interim futility analysis in single-arm phase II trial |
title_short | Application of Bayesian predictive probability for interim futility analysis in single-arm phase II trial |
title_sort | application of bayesian predictive probability for interim futility analysis in single-arm phase ii trial |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6711387/ https://www.ncbi.nlm.nih.gov/pubmed/31456910 http://dx.doi.org/10.21037/tcr.2019.05.17 |
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