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Application of Bayesian predictive probability for interim futility analysis in single-arm phase II trial

BACKGROUND: Bayesian predictive probability design, with a binary endpoint, is gaining attention for the phase II trial due to its innovative strategy. To make the Bayesian design more accessible, we elucidate this Bayesian approach with a R package to streamline a statistical plan, so biostatistici...

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Autores principales: Chen, Dung-Tsa, Schell, Michael J., Fulp, William J., Pettersson, Fredrik, Kim, Sungjune, Gray, Jhanelle E., Haura, Eric B.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: AME Publishing Company 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6711387/
https://www.ncbi.nlm.nih.gov/pubmed/31456910
http://dx.doi.org/10.21037/tcr.2019.05.17
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author Chen, Dung-Tsa
Schell, Michael J.
Fulp, William J.
Pettersson, Fredrik
Kim, Sungjune
Gray, Jhanelle E.
Haura, Eric B.
author_facet Chen, Dung-Tsa
Schell, Michael J.
Fulp, William J.
Pettersson, Fredrik
Kim, Sungjune
Gray, Jhanelle E.
Haura, Eric B.
author_sort Chen, Dung-Tsa
collection PubMed
description BACKGROUND: Bayesian predictive probability design, with a binary endpoint, is gaining attention for the phase II trial due to its innovative strategy. To make the Bayesian design more accessible, we elucidate this Bayesian approach with a R package to streamline a statistical plan, so biostatisticians and clinicians can easily integrate the design into clinical trial. METHODS: We utilize a Bayesian framework using Bayesian posterior probability and predictive probability to build a R package and develop a statistical plan for the trial design. With pre-defined sample sizes, the approach employs the posterior probability with a threshold to calculate the minimum number of responders needed at end of the study to claim efficacy. Then the predictive probability is applied to evaluate future success at interim stages and form stopping rule at each stage. RESULTS: An R package, ‘BayesianPredictiveFutility’, with associated graphical interface is developed for easy utilization of the trial design. The statistical tool generates a professional statistical plan with comprehensive results including a summary, details of study design, a series of tables and figures from stopping boundary for futility, Bayesian predictive probability, performance [probability of early termination (PET), type I error, and power], PET at each interim analysis, sensitivity analysis for predictive probability, posterior probability, sample size, and beta prior distribution. The statistical plan presents the methodology in a readable language fashion while preserving rigorous statistical arguments. The output formats (Word or PDF) are available to communicate with physicians or to be incorporated in the trial protocol. Two clinical trials in lung cancer are used to demonstrate its usefulness. CONCLUSIONS: Bayesian predictive probability method presents a flexible design in clinical trial. The statistical tool brings an added value to broaden the application.
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spelling pubmed-67113872019-08-27 Application of Bayesian predictive probability for interim futility analysis in single-arm phase II trial Chen, Dung-Tsa Schell, Michael J. Fulp, William J. Pettersson, Fredrik Kim, Sungjune Gray, Jhanelle E. Haura, Eric B. Transl Cancer Res Original Article BACKGROUND: Bayesian predictive probability design, with a binary endpoint, is gaining attention for the phase II trial due to its innovative strategy. To make the Bayesian design more accessible, we elucidate this Bayesian approach with a R package to streamline a statistical plan, so biostatisticians and clinicians can easily integrate the design into clinical trial. METHODS: We utilize a Bayesian framework using Bayesian posterior probability and predictive probability to build a R package and develop a statistical plan for the trial design. With pre-defined sample sizes, the approach employs the posterior probability with a threshold to calculate the minimum number of responders needed at end of the study to claim efficacy. Then the predictive probability is applied to evaluate future success at interim stages and form stopping rule at each stage. RESULTS: An R package, ‘BayesianPredictiveFutility’, with associated graphical interface is developed for easy utilization of the trial design. The statistical tool generates a professional statistical plan with comprehensive results including a summary, details of study design, a series of tables and figures from stopping boundary for futility, Bayesian predictive probability, performance [probability of early termination (PET), type I error, and power], PET at each interim analysis, sensitivity analysis for predictive probability, posterior probability, sample size, and beta prior distribution. The statistical plan presents the methodology in a readable language fashion while preserving rigorous statistical arguments. The output formats (Word or PDF) are available to communicate with physicians or to be incorporated in the trial protocol. Two clinical trials in lung cancer are used to demonstrate its usefulness. CONCLUSIONS: Bayesian predictive probability method presents a flexible design in clinical trial. The statistical tool brings an added value to broaden the application. AME Publishing Company 2019-07 /pmc/articles/PMC6711387/ /pubmed/31456910 http://dx.doi.org/10.21037/tcr.2019.05.17 Text en 2019 Translational Cancer Research. All rights reserved. https://creativecommons.org/licenses/by-nc-nd/4.0/Open Access Statement: This is an Open Access article distributed in accordance with the Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International License (CC BY-NC-ND 4.0), which permits the non-commercial replication and distribution of the article with the strict proviso that no changes or edits are made and the original work is properly cited (including links to both the formal publication through the relevant DOI and the license). See: https://creativecommons.org/licenses/by-nc-nd/4.0/.
spellingShingle Original Article
Chen, Dung-Tsa
Schell, Michael J.
Fulp, William J.
Pettersson, Fredrik
Kim, Sungjune
Gray, Jhanelle E.
Haura, Eric B.
Application of Bayesian predictive probability for interim futility analysis in single-arm phase II trial
title Application of Bayesian predictive probability for interim futility analysis in single-arm phase II trial
title_full Application of Bayesian predictive probability for interim futility analysis in single-arm phase II trial
title_fullStr Application of Bayesian predictive probability for interim futility analysis in single-arm phase II trial
title_full_unstemmed Application of Bayesian predictive probability for interim futility analysis in single-arm phase II trial
title_short Application of Bayesian predictive probability for interim futility analysis in single-arm phase II trial
title_sort application of bayesian predictive probability for interim futility analysis in single-arm phase ii trial
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6711387/
https://www.ncbi.nlm.nih.gov/pubmed/31456910
http://dx.doi.org/10.21037/tcr.2019.05.17
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