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Complex diffusion-weighted image estimation via matrix recovery under general noise models

We propose a patch-based singular value shrinkage method for diffusion magnetic resonance image estimation targeted at low signal to noise ratio and accelerated acquisitions. It operates on the complex data resulting from a sensitivity encoding reconstruction, where asymptotically optimal signal rec...

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Detalles Bibliográficos
Autores principales: Cordero-Grande, Lucilio, Christiaens, Daan, Hutter, Jana, Price, Anthony N., Hajnal, Jo V.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Academic Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6711461/
https://www.ncbi.nlm.nih.gov/pubmed/31226495
http://dx.doi.org/10.1016/j.neuroimage.2019.06.039
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author Cordero-Grande, Lucilio
Christiaens, Daan
Hutter, Jana
Price, Anthony N.
Hajnal, Jo V.
author_facet Cordero-Grande, Lucilio
Christiaens, Daan
Hutter, Jana
Price, Anthony N.
Hajnal, Jo V.
author_sort Cordero-Grande, Lucilio
collection PubMed
description We propose a patch-based singular value shrinkage method for diffusion magnetic resonance image estimation targeted at low signal to noise ratio and accelerated acquisitions. It operates on the complex data resulting from a sensitivity encoding reconstruction, where asymptotically optimal signal recovery guarantees can be attained by modeling the noise propagation in the reconstruction and subsequently simulating or calculating the limit singular value spectrum. Simple strategies are presented to deal with phase inconsistencies and optimize patch construction. The pertinence of our contributions is quantitatively validated on synthetic data, an in vivo adult example, and challenging neonatal and fetal cohorts. Our methodology is compared with related approaches, which generally operate on magnitude-only data and use data-based noise level estimation and singular value truncation. Visual examples are provided to illustrate effectiveness in generating denoised and debiased diffusion estimates with well preserved spatial and diffusion detail.
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spelling pubmed-67114612019-10-15 Complex diffusion-weighted image estimation via matrix recovery under general noise models Cordero-Grande, Lucilio Christiaens, Daan Hutter, Jana Price, Anthony N. Hajnal, Jo V. Neuroimage Article We propose a patch-based singular value shrinkage method for diffusion magnetic resonance image estimation targeted at low signal to noise ratio and accelerated acquisitions. It operates on the complex data resulting from a sensitivity encoding reconstruction, where asymptotically optimal signal recovery guarantees can be attained by modeling the noise propagation in the reconstruction and subsequently simulating or calculating the limit singular value spectrum. Simple strategies are presented to deal with phase inconsistencies and optimize patch construction. The pertinence of our contributions is quantitatively validated on synthetic data, an in vivo adult example, and challenging neonatal and fetal cohorts. Our methodology is compared with related approaches, which generally operate on magnitude-only data and use data-based noise level estimation and singular value truncation. Visual examples are provided to illustrate effectiveness in generating denoised and debiased diffusion estimates with well preserved spatial and diffusion detail. Academic Press 2019-10-15 /pmc/articles/PMC6711461/ /pubmed/31226495 http://dx.doi.org/10.1016/j.neuroimage.2019.06.039 Text en © 2019 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Cordero-Grande, Lucilio
Christiaens, Daan
Hutter, Jana
Price, Anthony N.
Hajnal, Jo V.
Complex diffusion-weighted image estimation via matrix recovery under general noise models
title Complex diffusion-weighted image estimation via matrix recovery under general noise models
title_full Complex diffusion-weighted image estimation via matrix recovery under general noise models
title_fullStr Complex diffusion-weighted image estimation via matrix recovery under general noise models
title_full_unstemmed Complex diffusion-weighted image estimation via matrix recovery under general noise models
title_short Complex diffusion-weighted image estimation via matrix recovery under general noise models
title_sort complex diffusion-weighted image estimation via matrix recovery under general noise models
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6711461/
https://www.ncbi.nlm.nih.gov/pubmed/31226495
http://dx.doi.org/10.1016/j.neuroimage.2019.06.039
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