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Dimensionality reduction of diffusion MRI measures for improved tractometry of the human brain

Various diffusion MRI (dMRI) measures have been proposed for characterising tissue microstructure over the last 15 years. Despite the growing number of experiments using different dMRI measures in assessments of white matter, there has been limited work on: 1) examining their covariance along specif...

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Autores principales: Chamberland, Maxime, Raven, Erika P., Genc, Sila, Duffy, Kate, Descoteaux, Maxime, Parker, Greg D., Tax, Chantal M.W., Jones, Derek K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Academic Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6711466/
https://www.ncbi.nlm.nih.gov/pubmed/31228638
http://dx.doi.org/10.1016/j.neuroimage.2019.06.020
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author Chamberland, Maxime
Raven, Erika P.
Genc, Sila
Duffy, Kate
Descoteaux, Maxime
Parker, Greg D.
Tax, Chantal M.W.
Jones, Derek K.
author_facet Chamberland, Maxime
Raven, Erika P.
Genc, Sila
Duffy, Kate
Descoteaux, Maxime
Parker, Greg D.
Tax, Chantal M.W.
Jones, Derek K.
author_sort Chamberland, Maxime
collection PubMed
description Various diffusion MRI (dMRI) measures have been proposed for characterising tissue microstructure over the last 15 years. Despite the growing number of experiments using different dMRI measures in assessments of white matter, there has been limited work on: 1) examining their covariance along specific pathways; and on 2) combining these different measures to study tissue microstructure. Indeed, it quickly becomes intractable for existing analysis pipelines to process multiple measurements at each voxel and at each vertex forming a streamline, highlighting the need for new ways to visualise or analyse such high-dimensional data. In a sample of 36 typically developing children aged 8–18 years, we profiled various commonly used dMRI measures across 22 brain pathways. Using a data-reduction approach, we identified two biologically-interpretable components that capture 80% of the variance in these dMRI measures. The first derived component captures properties related to hindrance and restriction in tissue microstructure, while the second component reflects characteristics related to tissue complexity and orientational dispersion. We then demonstrate that the components generated by this approach preserve the biological relevance of the original measurements by showing age-related effects across developmentally sensitive pathways. In summary, our findings demonstrate that dMRI analyses can benefit from dimensionality reduction techniques, to help disentangling the neurobiological underpinnings of white matter organisation.
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spelling pubmed-67114662019-10-15 Dimensionality reduction of diffusion MRI measures for improved tractometry of the human brain Chamberland, Maxime Raven, Erika P. Genc, Sila Duffy, Kate Descoteaux, Maxime Parker, Greg D. Tax, Chantal M.W. Jones, Derek K. Neuroimage Article Various diffusion MRI (dMRI) measures have been proposed for characterising tissue microstructure over the last 15 years. Despite the growing number of experiments using different dMRI measures in assessments of white matter, there has been limited work on: 1) examining their covariance along specific pathways; and on 2) combining these different measures to study tissue microstructure. Indeed, it quickly becomes intractable for existing analysis pipelines to process multiple measurements at each voxel and at each vertex forming a streamline, highlighting the need for new ways to visualise or analyse such high-dimensional data. In a sample of 36 typically developing children aged 8–18 years, we profiled various commonly used dMRI measures across 22 brain pathways. Using a data-reduction approach, we identified two biologically-interpretable components that capture 80% of the variance in these dMRI measures. The first derived component captures properties related to hindrance and restriction in tissue microstructure, while the second component reflects characteristics related to tissue complexity and orientational dispersion. We then demonstrate that the components generated by this approach preserve the biological relevance of the original measurements by showing age-related effects across developmentally sensitive pathways. In summary, our findings demonstrate that dMRI analyses can benefit from dimensionality reduction techniques, to help disentangling the neurobiological underpinnings of white matter organisation. Academic Press 2019-10-15 /pmc/articles/PMC6711466/ /pubmed/31228638 http://dx.doi.org/10.1016/j.neuroimage.2019.06.020 Text en © 2019 The Author(s) http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Chamberland, Maxime
Raven, Erika P.
Genc, Sila
Duffy, Kate
Descoteaux, Maxime
Parker, Greg D.
Tax, Chantal M.W.
Jones, Derek K.
Dimensionality reduction of diffusion MRI measures for improved tractometry of the human brain
title Dimensionality reduction of diffusion MRI measures for improved tractometry of the human brain
title_full Dimensionality reduction of diffusion MRI measures for improved tractometry of the human brain
title_fullStr Dimensionality reduction of diffusion MRI measures for improved tractometry of the human brain
title_full_unstemmed Dimensionality reduction of diffusion MRI measures for improved tractometry of the human brain
title_short Dimensionality reduction of diffusion MRI measures for improved tractometry of the human brain
title_sort dimensionality reduction of diffusion mri measures for improved tractometry of the human brain
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6711466/
https://www.ncbi.nlm.nih.gov/pubmed/31228638
http://dx.doi.org/10.1016/j.neuroimage.2019.06.020
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