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OLICH: A reference library of DNA barcodes for Nordic lichens
Abstract. BACKGROUND: DNA barcodes are increasingly being used for species identification amongst the lichenised fungi. This paper presents a dataset aiming to provide an authoritative DNA barcode sequence library for a wide array of Nordic lichens. NEW INFORMATION: We present 1324 DNA barcode seque...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Pensoft Publishers
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6711938/ https://www.ncbi.nlm.nih.gov/pubmed/31523159 http://dx.doi.org/10.3897/BDJ.7.e36252 |
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author | Marthinsen, Gunnhild Rui, Siri Timdal, Einar |
author_facet | Marthinsen, Gunnhild Rui, Siri Timdal, Einar |
author_sort | Marthinsen, Gunnhild |
collection | PubMed |
description | Abstract. BACKGROUND: DNA barcodes are increasingly being used for species identification amongst the lichenised fungi. This paper presents a dataset aiming to provide an authoritative DNA barcode sequence library for a wide array of Nordic lichens. NEW INFORMATION: We present 1324 DNA barcode sequences (nrITS) for 507 species in 175 genera and 25 orders. Thirty-eight species are new to GenBank and, for 25 additional species, ITS sequences are here presented for the first time. The dataset covers 20–21% of the Nordic lichenised species. Barcode gap analyses are given and discussed for the three genera Cladonia, Ramalina and Umbilicaria. The new combination Bryobilimbia fissuriseda (Poelt) Timdal, Marthinsen & Rui is proposed for Mycobilimbia fissuriseda and Nordic material of the species, currently referred to as Pseudocyphellaria crocata and Psoroma tenue ssp. boreale, are shown to belong in Pseudocyphellaria citrina and Psoroma cinnamomeum, respectively. |
format | Online Article Text |
id | pubmed-6711938 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Pensoft Publishers |
record_format | MEDLINE/PubMed |
spelling | pubmed-67119382019-09-13 OLICH: A reference library of DNA barcodes for Nordic lichens Marthinsen, Gunnhild Rui, Siri Timdal, Einar Biodivers Data J Data Paper (Biosciences) Abstract. BACKGROUND: DNA barcodes are increasingly being used for species identification amongst the lichenised fungi. This paper presents a dataset aiming to provide an authoritative DNA barcode sequence library for a wide array of Nordic lichens. NEW INFORMATION: We present 1324 DNA barcode sequences (nrITS) for 507 species in 175 genera and 25 orders. Thirty-eight species are new to GenBank and, for 25 additional species, ITS sequences are here presented for the first time. The dataset covers 20–21% of the Nordic lichenised species. Barcode gap analyses are given and discussed for the three genera Cladonia, Ramalina and Umbilicaria. The new combination Bryobilimbia fissuriseda (Poelt) Timdal, Marthinsen & Rui is proposed for Mycobilimbia fissuriseda and Nordic material of the species, currently referred to as Pseudocyphellaria crocata and Psoroma tenue ssp. boreale, are shown to belong in Pseudocyphellaria citrina and Psoroma cinnamomeum, respectively. Pensoft Publishers 2019-08-19 /pmc/articles/PMC6711938/ /pubmed/31523159 http://dx.doi.org/10.3897/BDJ.7.e36252 Text en Gunnhild Marthinsen, Siri Rui, Einar Timdal http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Data Paper (Biosciences) Marthinsen, Gunnhild Rui, Siri Timdal, Einar OLICH: A reference library of DNA barcodes for Nordic lichens |
title | OLICH: A reference library of DNA barcodes for Nordic lichens |
title_full | OLICH: A reference library of DNA barcodes for Nordic lichens |
title_fullStr | OLICH: A reference library of DNA barcodes for Nordic lichens |
title_full_unstemmed | OLICH: A reference library of DNA barcodes for Nordic lichens |
title_short | OLICH: A reference library of DNA barcodes for Nordic lichens |
title_sort | olich: a reference library of dna barcodes for nordic lichens |
topic | Data Paper (Biosciences) |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6711938/ https://www.ncbi.nlm.nih.gov/pubmed/31523159 http://dx.doi.org/10.3897/BDJ.7.e36252 |
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