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Bayesian Generative Models for Knowledge Transfer in MRI Semantic Segmentation Problems

Automatic segmentation methods based on deep learning have recently demonstrated state-of-the-art performance, outperforming the ordinary methods. Nevertheless, these methods are inapplicable for small datasets, which are very common in medical problems. To this end, we propose a knowledge transfer...

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Detalles Bibliográficos
Autores principales: Kuzina, Anna, Egorov, Evgenii, Burnaev, Evgeny
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6712162/
https://www.ncbi.nlm.nih.gov/pubmed/31496928
http://dx.doi.org/10.3389/fnins.2019.00844
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author Kuzina, Anna
Egorov, Evgenii
Burnaev, Evgeny
author_facet Kuzina, Anna
Egorov, Evgenii
Burnaev, Evgeny
author_sort Kuzina, Anna
collection PubMed
description Automatic segmentation methods based on deep learning have recently demonstrated state-of-the-art performance, outperforming the ordinary methods. Nevertheless, these methods are inapplicable for small datasets, which are very common in medical problems. To this end, we propose a knowledge transfer method between diseases via the Generative Bayesian Prior network. Our approach is compared to a pre-train approach and random initialization and obtains the best results in terms of Dice Similarity Coefficient metric for the small subsets of the Brain Tumor Segmentation 2018 database (BRATS2018).
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spelling pubmed-67121622019-09-06 Bayesian Generative Models for Knowledge Transfer in MRI Semantic Segmentation Problems Kuzina, Anna Egorov, Evgenii Burnaev, Evgeny Front Neurosci Neuroscience Automatic segmentation methods based on deep learning have recently demonstrated state-of-the-art performance, outperforming the ordinary methods. Nevertheless, these methods are inapplicable for small datasets, which are very common in medical problems. To this end, we propose a knowledge transfer method between diseases via the Generative Bayesian Prior network. Our approach is compared to a pre-train approach and random initialization and obtains the best results in terms of Dice Similarity Coefficient metric for the small subsets of the Brain Tumor Segmentation 2018 database (BRATS2018). Frontiers Media S.A. 2019-08-21 /pmc/articles/PMC6712162/ /pubmed/31496928 http://dx.doi.org/10.3389/fnins.2019.00844 Text en Copyright © 2019 Kuzina, Egorov and Burnaev. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Kuzina, Anna
Egorov, Evgenii
Burnaev, Evgeny
Bayesian Generative Models for Knowledge Transfer in MRI Semantic Segmentation Problems
title Bayesian Generative Models for Knowledge Transfer in MRI Semantic Segmentation Problems
title_full Bayesian Generative Models for Knowledge Transfer in MRI Semantic Segmentation Problems
title_fullStr Bayesian Generative Models for Knowledge Transfer in MRI Semantic Segmentation Problems
title_full_unstemmed Bayesian Generative Models for Knowledge Transfer in MRI Semantic Segmentation Problems
title_short Bayesian Generative Models for Knowledge Transfer in MRI Semantic Segmentation Problems
title_sort bayesian generative models for knowledge transfer in mri semantic segmentation problems
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6712162/
https://www.ncbi.nlm.nih.gov/pubmed/31496928
http://dx.doi.org/10.3389/fnins.2019.00844
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