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Bayesian Generative Models for Knowledge Transfer in MRI Semantic Segmentation Problems
Automatic segmentation methods based on deep learning have recently demonstrated state-of-the-art performance, outperforming the ordinary methods. Nevertheless, these methods are inapplicable for small datasets, which are very common in medical problems. To this end, we propose a knowledge transfer...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6712162/ https://www.ncbi.nlm.nih.gov/pubmed/31496928 http://dx.doi.org/10.3389/fnins.2019.00844 |
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author | Kuzina, Anna Egorov, Evgenii Burnaev, Evgeny |
author_facet | Kuzina, Anna Egorov, Evgenii Burnaev, Evgeny |
author_sort | Kuzina, Anna |
collection | PubMed |
description | Automatic segmentation methods based on deep learning have recently demonstrated state-of-the-art performance, outperforming the ordinary methods. Nevertheless, these methods are inapplicable for small datasets, which are very common in medical problems. To this end, we propose a knowledge transfer method between diseases via the Generative Bayesian Prior network. Our approach is compared to a pre-train approach and random initialization and obtains the best results in terms of Dice Similarity Coefficient metric for the small subsets of the Brain Tumor Segmentation 2018 database (BRATS2018). |
format | Online Article Text |
id | pubmed-6712162 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-67121622019-09-06 Bayesian Generative Models for Knowledge Transfer in MRI Semantic Segmentation Problems Kuzina, Anna Egorov, Evgenii Burnaev, Evgeny Front Neurosci Neuroscience Automatic segmentation methods based on deep learning have recently demonstrated state-of-the-art performance, outperforming the ordinary methods. Nevertheless, these methods are inapplicable for small datasets, which are very common in medical problems. To this end, we propose a knowledge transfer method between diseases via the Generative Bayesian Prior network. Our approach is compared to a pre-train approach and random initialization and obtains the best results in terms of Dice Similarity Coefficient metric for the small subsets of the Brain Tumor Segmentation 2018 database (BRATS2018). Frontiers Media S.A. 2019-08-21 /pmc/articles/PMC6712162/ /pubmed/31496928 http://dx.doi.org/10.3389/fnins.2019.00844 Text en Copyright © 2019 Kuzina, Egorov and Burnaev. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neuroscience Kuzina, Anna Egorov, Evgenii Burnaev, Evgeny Bayesian Generative Models for Knowledge Transfer in MRI Semantic Segmentation Problems |
title | Bayesian Generative Models for Knowledge Transfer in MRI Semantic Segmentation Problems |
title_full | Bayesian Generative Models for Knowledge Transfer in MRI Semantic Segmentation Problems |
title_fullStr | Bayesian Generative Models for Knowledge Transfer in MRI Semantic Segmentation Problems |
title_full_unstemmed | Bayesian Generative Models for Knowledge Transfer in MRI Semantic Segmentation Problems |
title_short | Bayesian Generative Models for Knowledge Transfer in MRI Semantic Segmentation Problems |
title_sort | bayesian generative models for knowledge transfer in mri semantic segmentation problems |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6712162/ https://www.ncbi.nlm.nih.gov/pubmed/31496928 http://dx.doi.org/10.3389/fnins.2019.00844 |
work_keys_str_mv | AT kuzinaanna bayesiangenerativemodelsforknowledgetransferinmrisemanticsegmentationproblems AT egorovevgenii bayesiangenerativemodelsforknowledgetransferinmrisemanticsegmentationproblems AT burnaevevgeny bayesiangenerativemodelsforknowledgetransferinmrisemanticsegmentationproblems |