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Complete genome sequence of Nitratireductor sp. strain OM-1: A lipid-producing bacterium with potential use in wastewater treatment

Reducing CO(2) emissions is necessary to alleviate rising global temperature. Renewable sources of energy are becoming an increasingly important substitute for fossil fuels. An important step in this direction is the isolation of novel, technologically relevant microorganisms. Nitratireductor sp. st...

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Autores principales: Okamura, Yoshiko, Treu, Laura, Campanaro, Stefano, Yamashita, Sena, Nakai, Shota, Takahashi, Hirokazu, Watanabe, Kenshi, Angelidaki, Irini, Aki, Tsunehiro, Matsumura, Yukihiko, Nakashimada, Yutaka
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6712368/
https://www.ncbi.nlm.nih.gov/pubmed/31467863
http://dx.doi.org/10.1016/j.btre.2019.e00366
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author Okamura, Yoshiko
Treu, Laura
Campanaro, Stefano
Yamashita, Sena
Nakai, Shota
Takahashi, Hirokazu
Watanabe, Kenshi
Angelidaki, Irini
Aki, Tsunehiro
Matsumura, Yukihiko
Nakashimada, Yutaka
author_facet Okamura, Yoshiko
Treu, Laura
Campanaro, Stefano
Yamashita, Sena
Nakai, Shota
Takahashi, Hirokazu
Watanabe, Kenshi
Angelidaki, Irini
Aki, Tsunehiro
Matsumura, Yukihiko
Nakashimada, Yutaka
author_sort Okamura, Yoshiko
collection PubMed
description Reducing CO(2) emissions is necessary to alleviate rising global temperature. Renewable sources of energy are becoming an increasingly important substitute for fossil fuels. An important step in this direction is the isolation of novel, technologically relevant microorganisms. Nitratireductor sp. strain OM-1 can convert volatile short-chain fatty acids in wastewater into 2-butenoic acid and its ester and can accumulate intracellularly esterified compounds up to 50% of its dried cell weight under nitrogen-depleted conditions. It is believed that a novel fatty acid biosynthesis pathway including an esterifying enzyme is encoded in its genome. In this study, we report the whole-genome sequence (4.8 Mb) of OM-1, which comprises a chromosome (3,977,827 bp) and a megaplasmid (857,937 bp). This sequence information provides insight into the genome organization and biochemical pathways of OM-1. In addition, we identified lipid biosynthesis pathways in OM-1, paving the way to a better understanding of its biochemical characterization.
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spelling pubmed-67123682019-08-29 Complete genome sequence of Nitratireductor sp. strain OM-1: A lipid-producing bacterium with potential use in wastewater treatment Okamura, Yoshiko Treu, Laura Campanaro, Stefano Yamashita, Sena Nakai, Shota Takahashi, Hirokazu Watanabe, Kenshi Angelidaki, Irini Aki, Tsunehiro Matsumura, Yukihiko Nakashimada, Yutaka Biotechnol Rep (Amst) Short Communication Reducing CO(2) emissions is necessary to alleviate rising global temperature. Renewable sources of energy are becoming an increasingly important substitute for fossil fuels. An important step in this direction is the isolation of novel, technologically relevant microorganisms. Nitratireductor sp. strain OM-1 can convert volatile short-chain fatty acids in wastewater into 2-butenoic acid and its ester and can accumulate intracellularly esterified compounds up to 50% of its dried cell weight under nitrogen-depleted conditions. It is believed that a novel fatty acid biosynthesis pathway including an esterifying enzyme is encoded in its genome. In this study, we report the whole-genome sequence (4.8 Mb) of OM-1, which comprises a chromosome (3,977,827 bp) and a megaplasmid (857,937 bp). This sequence information provides insight into the genome organization and biochemical pathways of OM-1. In addition, we identified lipid biosynthesis pathways in OM-1, paving the way to a better understanding of its biochemical characterization. Elsevier 2019-08-09 /pmc/articles/PMC6712368/ /pubmed/31467863 http://dx.doi.org/10.1016/j.btre.2019.e00366 Text en © 2019 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Short Communication
Okamura, Yoshiko
Treu, Laura
Campanaro, Stefano
Yamashita, Sena
Nakai, Shota
Takahashi, Hirokazu
Watanabe, Kenshi
Angelidaki, Irini
Aki, Tsunehiro
Matsumura, Yukihiko
Nakashimada, Yutaka
Complete genome sequence of Nitratireductor sp. strain OM-1: A lipid-producing bacterium with potential use in wastewater treatment
title Complete genome sequence of Nitratireductor sp. strain OM-1: A lipid-producing bacterium with potential use in wastewater treatment
title_full Complete genome sequence of Nitratireductor sp. strain OM-1: A lipid-producing bacterium with potential use in wastewater treatment
title_fullStr Complete genome sequence of Nitratireductor sp. strain OM-1: A lipid-producing bacterium with potential use in wastewater treatment
title_full_unstemmed Complete genome sequence of Nitratireductor sp. strain OM-1: A lipid-producing bacterium with potential use in wastewater treatment
title_short Complete genome sequence of Nitratireductor sp. strain OM-1: A lipid-producing bacterium with potential use in wastewater treatment
title_sort complete genome sequence of nitratireductor sp. strain om-1: a lipid-producing bacterium with potential use in wastewater treatment
topic Short Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6712368/
https://www.ncbi.nlm.nih.gov/pubmed/31467863
http://dx.doi.org/10.1016/j.btre.2019.e00366
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