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Complete genome sequence of Nitratireductor sp. strain OM-1: A lipid-producing bacterium with potential use in wastewater treatment
Reducing CO(2) emissions is necessary to alleviate rising global temperature. Renewable sources of energy are becoming an increasingly important substitute for fossil fuels. An important step in this direction is the isolation of novel, technologically relevant microorganisms. Nitratireductor sp. st...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6712368/ https://www.ncbi.nlm.nih.gov/pubmed/31467863 http://dx.doi.org/10.1016/j.btre.2019.e00366 |
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author | Okamura, Yoshiko Treu, Laura Campanaro, Stefano Yamashita, Sena Nakai, Shota Takahashi, Hirokazu Watanabe, Kenshi Angelidaki, Irini Aki, Tsunehiro Matsumura, Yukihiko Nakashimada, Yutaka |
author_facet | Okamura, Yoshiko Treu, Laura Campanaro, Stefano Yamashita, Sena Nakai, Shota Takahashi, Hirokazu Watanabe, Kenshi Angelidaki, Irini Aki, Tsunehiro Matsumura, Yukihiko Nakashimada, Yutaka |
author_sort | Okamura, Yoshiko |
collection | PubMed |
description | Reducing CO(2) emissions is necessary to alleviate rising global temperature. Renewable sources of energy are becoming an increasingly important substitute for fossil fuels. An important step in this direction is the isolation of novel, technologically relevant microorganisms. Nitratireductor sp. strain OM-1 can convert volatile short-chain fatty acids in wastewater into 2-butenoic acid and its ester and can accumulate intracellularly esterified compounds up to 50% of its dried cell weight under nitrogen-depleted conditions. It is believed that a novel fatty acid biosynthesis pathway including an esterifying enzyme is encoded in its genome. In this study, we report the whole-genome sequence (4.8 Mb) of OM-1, which comprises a chromosome (3,977,827 bp) and a megaplasmid (857,937 bp). This sequence information provides insight into the genome organization and biochemical pathways of OM-1. In addition, we identified lipid biosynthesis pathways in OM-1, paving the way to a better understanding of its biochemical characterization. |
format | Online Article Text |
id | pubmed-6712368 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-67123682019-08-29 Complete genome sequence of Nitratireductor sp. strain OM-1: A lipid-producing bacterium with potential use in wastewater treatment Okamura, Yoshiko Treu, Laura Campanaro, Stefano Yamashita, Sena Nakai, Shota Takahashi, Hirokazu Watanabe, Kenshi Angelidaki, Irini Aki, Tsunehiro Matsumura, Yukihiko Nakashimada, Yutaka Biotechnol Rep (Amst) Short Communication Reducing CO(2) emissions is necessary to alleviate rising global temperature. Renewable sources of energy are becoming an increasingly important substitute for fossil fuels. An important step in this direction is the isolation of novel, technologically relevant microorganisms. Nitratireductor sp. strain OM-1 can convert volatile short-chain fatty acids in wastewater into 2-butenoic acid and its ester and can accumulate intracellularly esterified compounds up to 50% of its dried cell weight under nitrogen-depleted conditions. It is believed that a novel fatty acid biosynthesis pathway including an esterifying enzyme is encoded in its genome. In this study, we report the whole-genome sequence (4.8 Mb) of OM-1, which comprises a chromosome (3,977,827 bp) and a megaplasmid (857,937 bp). This sequence information provides insight into the genome organization and biochemical pathways of OM-1. In addition, we identified lipid biosynthesis pathways in OM-1, paving the way to a better understanding of its biochemical characterization. Elsevier 2019-08-09 /pmc/articles/PMC6712368/ /pubmed/31467863 http://dx.doi.org/10.1016/j.btre.2019.e00366 Text en © 2019 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Short Communication Okamura, Yoshiko Treu, Laura Campanaro, Stefano Yamashita, Sena Nakai, Shota Takahashi, Hirokazu Watanabe, Kenshi Angelidaki, Irini Aki, Tsunehiro Matsumura, Yukihiko Nakashimada, Yutaka Complete genome sequence of Nitratireductor sp. strain OM-1: A lipid-producing bacterium with potential use in wastewater treatment |
title | Complete genome sequence of Nitratireductor sp. strain OM-1: A lipid-producing bacterium with potential use in wastewater treatment |
title_full | Complete genome sequence of Nitratireductor sp. strain OM-1: A lipid-producing bacterium with potential use in wastewater treatment |
title_fullStr | Complete genome sequence of Nitratireductor sp. strain OM-1: A lipid-producing bacterium with potential use in wastewater treatment |
title_full_unstemmed | Complete genome sequence of Nitratireductor sp. strain OM-1: A lipid-producing bacterium with potential use in wastewater treatment |
title_short | Complete genome sequence of Nitratireductor sp. strain OM-1: A lipid-producing bacterium with potential use in wastewater treatment |
title_sort | complete genome sequence of nitratireductor sp. strain om-1: a lipid-producing bacterium with potential use in wastewater treatment |
topic | Short Communication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6712368/ https://www.ncbi.nlm.nih.gov/pubmed/31467863 http://dx.doi.org/10.1016/j.btre.2019.e00366 |
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