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Reverse active learning based atrous DenseNet for pathological image classification

BACKGROUND: Due to the recent advances in deep learning, this model attracted researchers who have applied it to medical image analysis. However, pathological image analysis based on deep learning networks faces a number of challenges, such as the high resolution (gigapixel) of pathological images a...

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Detalles Bibliográficos
Autores principales: Li, Yuexiang, Xie, Xinpeng, Shen, Linlin, Liu, Shaoxiong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6712615/
https://www.ncbi.nlm.nih.gov/pubmed/31455228
http://dx.doi.org/10.1186/s12859-019-2979-y
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author Li, Yuexiang
Xie, Xinpeng
Shen, Linlin
Liu, Shaoxiong
author_facet Li, Yuexiang
Xie, Xinpeng
Shen, Linlin
Liu, Shaoxiong
author_sort Li, Yuexiang
collection PubMed
description BACKGROUND: Due to the recent advances in deep learning, this model attracted researchers who have applied it to medical image analysis. However, pathological image analysis based on deep learning networks faces a number of challenges, such as the high resolution (gigapixel) of pathological images and the lack of annotation capabilities. To address these challenges, we propose a training strategy called deep-reverse active learning (DRAL) and atrous DenseNet (ADN) for pathological image classification. The proposed DRAL can improve the classification accuracy of widely used deep learning networks such as VGG-16 and ResNet by removing mislabeled patches in the training set. As the size of a cancer area varies widely in pathological images, the proposed ADN integrates the atrous convolutions with the dense block for multiscale feature extraction. RESULTS: The proposed DRAL and ADN are evaluated using the following three pathological datasets: BACH, CCG, and UCSB. The experiment results demonstrate the excellent performance of the proposed DRAL + ADN framework, achieving patch-level average classification accuracies (ACA) of 94.10%, 92.05% and 97.63% on the BACH, CCG, and UCSB validation sets, respectively. CONCLUSIONS: The DRAL + ADN framework is a potential candidate for boosting the performance of deep learning models for partially mislabeled training datasets.
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spelling pubmed-67126152019-08-29 Reverse active learning based atrous DenseNet for pathological image classification Li, Yuexiang Xie, Xinpeng Shen, Linlin Liu, Shaoxiong BMC Bioinformatics Methodology Article BACKGROUND: Due to the recent advances in deep learning, this model attracted researchers who have applied it to medical image analysis. However, pathological image analysis based on deep learning networks faces a number of challenges, such as the high resolution (gigapixel) of pathological images and the lack of annotation capabilities. To address these challenges, we propose a training strategy called deep-reverse active learning (DRAL) and atrous DenseNet (ADN) for pathological image classification. The proposed DRAL can improve the classification accuracy of widely used deep learning networks such as VGG-16 and ResNet by removing mislabeled patches in the training set. As the size of a cancer area varies widely in pathological images, the proposed ADN integrates the atrous convolutions with the dense block for multiscale feature extraction. RESULTS: The proposed DRAL and ADN are evaluated using the following three pathological datasets: BACH, CCG, and UCSB. The experiment results demonstrate the excellent performance of the proposed DRAL + ADN framework, achieving patch-level average classification accuracies (ACA) of 94.10%, 92.05% and 97.63% on the BACH, CCG, and UCSB validation sets, respectively. CONCLUSIONS: The DRAL + ADN framework is a potential candidate for boosting the performance of deep learning models for partially mislabeled training datasets. BioMed Central 2019-08-28 /pmc/articles/PMC6712615/ /pubmed/31455228 http://dx.doi.org/10.1186/s12859-019-2979-y Text en © The Author(s) 2019 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License(http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver(http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Methodology Article
Li, Yuexiang
Xie, Xinpeng
Shen, Linlin
Liu, Shaoxiong
Reverse active learning based atrous DenseNet for pathological image classification
title Reverse active learning based atrous DenseNet for pathological image classification
title_full Reverse active learning based atrous DenseNet for pathological image classification
title_fullStr Reverse active learning based atrous DenseNet for pathological image classification
title_full_unstemmed Reverse active learning based atrous DenseNet for pathological image classification
title_short Reverse active learning based atrous DenseNet for pathological image classification
title_sort reverse active learning based atrous densenet for pathological image classification
topic Methodology Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6712615/
https://www.ncbi.nlm.nih.gov/pubmed/31455228
http://dx.doi.org/10.1186/s12859-019-2979-y
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