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Reverse active learning based atrous DenseNet for pathological image classification
BACKGROUND: Due to the recent advances in deep learning, this model attracted researchers who have applied it to medical image analysis. However, pathological image analysis based on deep learning networks faces a number of challenges, such as the high resolution (gigapixel) of pathological images a...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6712615/ https://www.ncbi.nlm.nih.gov/pubmed/31455228 http://dx.doi.org/10.1186/s12859-019-2979-y |
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author | Li, Yuexiang Xie, Xinpeng Shen, Linlin Liu, Shaoxiong |
author_facet | Li, Yuexiang Xie, Xinpeng Shen, Linlin Liu, Shaoxiong |
author_sort | Li, Yuexiang |
collection | PubMed |
description | BACKGROUND: Due to the recent advances in deep learning, this model attracted researchers who have applied it to medical image analysis. However, pathological image analysis based on deep learning networks faces a number of challenges, such as the high resolution (gigapixel) of pathological images and the lack of annotation capabilities. To address these challenges, we propose a training strategy called deep-reverse active learning (DRAL) and atrous DenseNet (ADN) for pathological image classification. The proposed DRAL can improve the classification accuracy of widely used deep learning networks such as VGG-16 and ResNet by removing mislabeled patches in the training set. As the size of a cancer area varies widely in pathological images, the proposed ADN integrates the atrous convolutions with the dense block for multiscale feature extraction. RESULTS: The proposed DRAL and ADN are evaluated using the following three pathological datasets: BACH, CCG, and UCSB. The experiment results demonstrate the excellent performance of the proposed DRAL + ADN framework, achieving patch-level average classification accuracies (ACA) of 94.10%, 92.05% and 97.63% on the BACH, CCG, and UCSB validation sets, respectively. CONCLUSIONS: The DRAL + ADN framework is a potential candidate for boosting the performance of deep learning models for partially mislabeled training datasets. |
format | Online Article Text |
id | pubmed-6712615 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-67126152019-08-29 Reverse active learning based atrous DenseNet for pathological image classification Li, Yuexiang Xie, Xinpeng Shen, Linlin Liu, Shaoxiong BMC Bioinformatics Methodology Article BACKGROUND: Due to the recent advances in deep learning, this model attracted researchers who have applied it to medical image analysis. However, pathological image analysis based on deep learning networks faces a number of challenges, such as the high resolution (gigapixel) of pathological images and the lack of annotation capabilities. To address these challenges, we propose a training strategy called deep-reverse active learning (DRAL) and atrous DenseNet (ADN) for pathological image classification. The proposed DRAL can improve the classification accuracy of widely used deep learning networks such as VGG-16 and ResNet by removing mislabeled patches in the training set. As the size of a cancer area varies widely in pathological images, the proposed ADN integrates the atrous convolutions with the dense block for multiscale feature extraction. RESULTS: The proposed DRAL and ADN are evaluated using the following three pathological datasets: BACH, CCG, and UCSB. The experiment results demonstrate the excellent performance of the proposed DRAL + ADN framework, achieving patch-level average classification accuracies (ACA) of 94.10%, 92.05% and 97.63% on the BACH, CCG, and UCSB validation sets, respectively. CONCLUSIONS: The DRAL + ADN framework is a potential candidate for boosting the performance of deep learning models for partially mislabeled training datasets. BioMed Central 2019-08-28 /pmc/articles/PMC6712615/ /pubmed/31455228 http://dx.doi.org/10.1186/s12859-019-2979-y Text en © The Author(s) 2019 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License(http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver(http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Methodology Article Li, Yuexiang Xie, Xinpeng Shen, Linlin Liu, Shaoxiong Reverse active learning based atrous DenseNet for pathological image classification |
title | Reverse active learning based atrous DenseNet for pathological image classification |
title_full | Reverse active learning based atrous DenseNet for pathological image classification |
title_fullStr | Reverse active learning based atrous DenseNet for pathological image classification |
title_full_unstemmed | Reverse active learning based atrous DenseNet for pathological image classification |
title_short | Reverse active learning based atrous DenseNet for pathological image classification |
title_sort | reverse active learning based atrous densenet for pathological image classification |
topic | Methodology Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6712615/ https://www.ncbi.nlm.nih.gov/pubmed/31455228 http://dx.doi.org/10.1186/s12859-019-2979-y |
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