Dataset of genome identification and characterization of microsatellite markers loci in Atriplex atacamensis and Atriplex deserticola

In this work, we partially sequenced genomes of two Atriplex species (A. deserticola Phil. and A. atacamensis Phil.), using Illumina technology (Hiseq 2500 paired-end system) and de novo assembly strategy. Raw data of A. deserticola and A. atacamensis are available from NCBI-Bioproject, PRJNA495747...

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Detalles Bibliográficos
Autores principales: Correa, Francisco, Pérez-Díaz, Jorge, Rojas, Pamela, Torres, Claudia, Paneque, Manuel, Sagredo, Boris, Bastías, Adriana
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2019
Materias:
Genetics, Genomics and Molecular Biology
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6715819/
https://www.ncbi.nlm.nih.gov/pubmed/31485465
http://dx.doi.org/10.1016/j.dib.2019.104258
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author Correa, Francisco
Pérez-Díaz, Jorge
Rojas, Pamela
Torres, Claudia
Paneque, Manuel
Sagredo, Boris
Bastías, Adriana
author_facet Correa, Francisco
Pérez-Díaz, Jorge
Rojas, Pamela
Torres, Claudia
Paneque, Manuel
Sagredo, Boris
Bastías, Adriana
author_sort Correa, Francisco
collection PubMed
description In this work, we partially sequenced genomes of two Atriplex species (A. deserticola Phil. and A. atacamensis Phil.), using Illumina technology (Hiseq 2500 paired-end system) and de novo assembly strategy. Raw data of A. deserticola and A. atacamensis are available from NCBI-Bioproject, PRJNA495747 and PRJNA495763 accessions, respectively. A total of 127086 and 134984 microsatellite or simple sequence repeat (SSR) markers were identified within A. deserticola and A. atacamensis genomic DNA, respectively. In addition, predicted putative genes in A. deserticola and A. atacamensis sequences are also presented in this article.
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spelling pubmed-67158192019-09-04 Dataset of genome identification and characterization of microsatellite markers loci in Atriplex atacamensis and Atriplex deserticola Correa, Francisco Pérez-Díaz, Jorge Rojas, Pamela Torres, Claudia Paneque, Manuel Sagredo, Boris Bastías, Adriana Data Brief Genetics, Genomics and Molecular Biology In this work, we partially sequenced genomes of two Atriplex species (A. deserticola Phil. and A. atacamensis Phil.), using Illumina technology (Hiseq 2500 paired-end system) and de novo assembly strategy. Raw data of A. deserticola and A. atacamensis are available from NCBI-Bioproject, PRJNA495747 and PRJNA495763 accessions, respectively. A total of 127086 and 134984 microsatellite or simple sequence repeat (SSR) markers were identified within A. deserticola and A. atacamensis genomic DNA, respectively. In addition, predicted putative genes in A. deserticola and A. atacamensis sequences are also presented in this article. Elsevier 2019-08-09 /pmc/articles/PMC6715819/ /pubmed/31485465 http://dx.doi.org/10.1016/j.dib.2019.104258 Text en © 2019 The Author(s) http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Genetics, Genomics and Molecular Biology
Correa, Francisco
Pérez-Díaz, Jorge
Rojas, Pamela
Torres, Claudia
Paneque, Manuel
Sagredo, Boris
Bastías, Adriana
Dataset of genome identification and characterization of microsatellite markers loci in Atriplex atacamensis and Atriplex deserticola
title Dataset of genome identification and characterization of microsatellite markers loci in Atriplex atacamensis and Atriplex deserticola
title_full Dataset of genome identification and characterization of microsatellite markers loci in Atriplex atacamensis and Atriplex deserticola
title_fullStr Dataset of genome identification and characterization of microsatellite markers loci in Atriplex atacamensis and Atriplex deserticola
title_full_unstemmed Dataset of genome identification and characterization of microsatellite markers loci in Atriplex atacamensis and Atriplex deserticola
title_short Dataset of genome identification and characterization of microsatellite markers loci in Atriplex atacamensis and Atriplex deserticola
title_sort dataset of genome identification and characterization of microsatellite markers loci in atriplex atacamensis and atriplex deserticola
topic Genetics, Genomics and Molecular Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6715819/
https://www.ncbi.nlm.nih.gov/pubmed/31485465
http://dx.doi.org/10.1016/j.dib.2019.104258
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