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Integrated analysis of circular RNA-associated ceRNA network in cervical cancer: Observational Study

BACKGROUND: Circular RNAs (circRNAs) have displayed dysregulated expression in several types of cancer. Nevertheless, their function and underlying mechanisms in cervical cancer remains largely unknown. This study aimed to describe the regulatory mechanisms in cervical cancer. METHODS: We downloaded...

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Autores principales: Gong, Jun, Jiang, Hui, Shu, Chang, Hu, Mei-qin, Huang, Yan, Liu, Qin, Li, Rong-feng, Wei, Yin-zhi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Wolters Kluwer Health 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6716739/
https://www.ncbi.nlm.nih.gov/pubmed/31441876
http://dx.doi.org/10.1097/MD.0000000000016922
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author Gong, Jun
Jiang, Hui
Shu, Chang
Hu, Mei-qin
Huang, Yan
Liu, Qin
Li, Rong-feng
Wei, Yin-zhi
author_facet Gong, Jun
Jiang, Hui
Shu, Chang
Hu, Mei-qin
Huang, Yan
Liu, Qin
Li, Rong-feng
Wei, Yin-zhi
author_sort Gong, Jun
collection PubMed
description BACKGROUND: Circular RNAs (circRNAs) have displayed dysregulated expression in several types of cancer. Nevertheless, their function and underlying mechanisms in cervical cancer remains largely unknown. This study aimed to describe the regulatory mechanisms in cervical cancer. METHODS: We downloaded the circRNAs expression profiles from Gene Expression Omnibus database, and RNAs expression profiles from The Cancer Genome Atlas database. We established a circRNA-miRNA-mRNA and circRNA-miRNA-hubgene network. The interactions between proteins were analyzed using the STRING database and hubgenes were identified using MCODE plugin. Then, we conducted a circRNA-miRNA-hubgenes regulatory module. Functional and pathway enrichment analyses were conducted using R packages “Clusterprofile”. RESULTS: Six circRNAs, 15 miRNAs, and 158 mRNAs were identified to construct the ceRNA network of cervical cancer. PPI (protein-protein interaction) network and module analysis identified 7 hubgenes. Then, a circRNA-miRNA-hubgene subnetwork was constructed based on the 1 DEcircRNAs, 3 DEmiRNAs, and 3 DEmRNAs. The KEGG pathway analysis indicated DEmRNAs are involved in progesterone-mediated oocyte maturation, cell cycle, and oocyte meiosis. CONCLUSION: These ceRNAs are critical in the pathogenesis of cervical and may serve as future therapeutic biomarkers.
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spelling pubmed-67167392019-10-01 Integrated analysis of circular RNA-associated ceRNA network in cervical cancer: Observational Study Gong, Jun Jiang, Hui Shu, Chang Hu, Mei-qin Huang, Yan Liu, Qin Li, Rong-feng Wei, Yin-zhi Medicine (Baltimore) 5600 BACKGROUND: Circular RNAs (circRNAs) have displayed dysregulated expression in several types of cancer. Nevertheless, their function and underlying mechanisms in cervical cancer remains largely unknown. This study aimed to describe the regulatory mechanisms in cervical cancer. METHODS: We downloaded the circRNAs expression profiles from Gene Expression Omnibus database, and RNAs expression profiles from The Cancer Genome Atlas database. We established a circRNA-miRNA-mRNA and circRNA-miRNA-hubgene network. The interactions between proteins were analyzed using the STRING database and hubgenes were identified using MCODE plugin. Then, we conducted a circRNA-miRNA-hubgenes regulatory module. Functional and pathway enrichment analyses were conducted using R packages “Clusterprofile”. RESULTS: Six circRNAs, 15 miRNAs, and 158 mRNAs were identified to construct the ceRNA network of cervical cancer. PPI (protein-protein interaction) network and module analysis identified 7 hubgenes. Then, a circRNA-miRNA-hubgene subnetwork was constructed based on the 1 DEcircRNAs, 3 DEmiRNAs, and 3 DEmRNAs. The KEGG pathway analysis indicated DEmRNAs are involved in progesterone-mediated oocyte maturation, cell cycle, and oocyte meiosis. CONCLUSION: These ceRNAs are critical in the pathogenesis of cervical and may serve as future therapeutic biomarkers. Wolters Kluwer Health 2019-08-23 /pmc/articles/PMC6716739/ /pubmed/31441876 http://dx.doi.org/10.1097/MD.0000000000016922 Text en Copyright © 2019 the Author(s). Published by Wolters Kluwer Health, Inc. http://creativecommons.org/licenses/by-nc-nd/4.0 This is an open access article distributed under the terms of the Creative Commons Attribution-Non Commercial-No Derivatives License 4.0 (CCBY-NC-ND), where it is permissible to download and share the work provided it is properly cited. The work cannot be changed in any way or used commercially without permission from the journal. http://creativecommons.org/licenses/by-nc-nd/4.0
spellingShingle 5600
Gong, Jun
Jiang, Hui
Shu, Chang
Hu, Mei-qin
Huang, Yan
Liu, Qin
Li, Rong-feng
Wei, Yin-zhi
Integrated analysis of circular RNA-associated ceRNA network in cervical cancer: Observational Study
title Integrated analysis of circular RNA-associated ceRNA network in cervical cancer: Observational Study
title_full Integrated analysis of circular RNA-associated ceRNA network in cervical cancer: Observational Study
title_fullStr Integrated analysis of circular RNA-associated ceRNA network in cervical cancer: Observational Study
title_full_unstemmed Integrated analysis of circular RNA-associated ceRNA network in cervical cancer: Observational Study
title_short Integrated analysis of circular RNA-associated ceRNA network in cervical cancer: Observational Study
title_sort integrated analysis of circular rna-associated cerna network in cervical cancer: observational study
topic 5600
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6716739/
https://www.ncbi.nlm.nih.gov/pubmed/31441876
http://dx.doi.org/10.1097/MD.0000000000016922
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