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Leaf transcriptome data of two tropical medicinal plants: Sterculia lanceolata and Clausena excavata
The data presented in this article are associated to the research articles, “DOI: 10.1007/s11295-019-1348-3”, [1]; and “DOI: 10.1007/s13205-018-1162-x” [2]. Clausena excavata Burm. f. and Sterculia lanceolata Cav. are medicinal tree plants [3,4] native to Southeast Asia and China, and most members o...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Elsevier
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6717166/ https://www.ncbi.nlm.nih.gov/pubmed/31489347 http://dx.doi.org/10.1016/j.dib.2019.104297 |
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author | Eom, Seok Hyun Na, Jong-Kuk |
author_facet | Eom, Seok Hyun Na, Jong-Kuk |
author_sort | Eom, Seok Hyun |
collection | PubMed |
description | The data presented in this article are associated to the research articles, “DOI: 10.1007/s11295-019-1348-3”, [1]; and “DOI: 10.1007/s13205-018-1162-x” [2]. Clausena excavata Burm. f. and Sterculia lanceolata Cav. are medicinal tree plants [3,4] native to Southeast Asia and China, and most members of both the genus Clausena and the genus Sterculia contain various valuable secondary metabolites with a great potential for drug development. Though many phytochemical studies have been conducted using plant extracts from various parts of these plants [4,5], there are very limited genetic resources available. RNA sequencing of C. excavata and S. lanceolata was conducted using pair-end Illumina HiSeq2500 sequencing system, from which the first de novo transcriptome data were produced for both genus Clausena and Sterculia. Transcriptome shotgun assembly using three different assembly tools [2] generated a total of 16,638 non-redundant contigs (N50, 900 bp) from C. excavata and 7,857 (N50, 423 bp) from S. lanceolata. The data are accessible at NCBI BioProject: PRJNA428402 for C. excavata [2] or PRJNA435648 for S. lanceolata[1]. |
format | Online Article Text |
id | pubmed-6717166 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-67171662019-09-05 Leaf transcriptome data of two tropical medicinal plants: Sterculia lanceolata and Clausena excavata Eom, Seok Hyun Na, Jong-Kuk Data Brief Agricultural and Biological Science The data presented in this article are associated to the research articles, “DOI: 10.1007/s11295-019-1348-3”, [1]; and “DOI: 10.1007/s13205-018-1162-x” [2]. Clausena excavata Burm. f. and Sterculia lanceolata Cav. are medicinal tree plants [3,4] native to Southeast Asia and China, and most members of both the genus Clausena and the genus Sterculia contain various valuable secondary metabolites with a great potential for drug development. Though many phytochemical studies have been conducted using plant extracts from various parts of these plants [4,5], there are very limited genetic resources available. RNA sequencing of C. excavata and S. lanceolata was conducted using pair-end Illumina HiSeq2500 sequencing system, from which the first de novo transcriptome data were produced for both genus Clausena and Sterculia. Transcriptome shotgun assembly using three different assembly tools [2] generated a total of 16,638 non-redundant contigs (N50, 900 bp) from C. excavata and 7,857 (N50, 423 bp) from S. lanceolata. The data are accessible at NCBI BioProject: PRJNA428402 for C. excavata [2] or PRJNA435648 for S. lanceolata[1]. Elsevier 2019-08-02 /pmc/articles/PMC6717166/ /pubmed/31489347 http://dx.doi.org/10.1016/j.dib.2019.104297 Text en © 2019 The Author(s) http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Agricultural and Biological Science Eom, Seok Hyun Na, Jong-Kuk Leaf transcriptome data of two tropical medicinal plants: Sterculia lanceolata and Clausena excavata |
title | Leaf transcriptome data of two tropical medicinal plants: Sterculia lanceolata and Clausena excavata |
title_full | Leaf transcriptome data of two tropical medicinal plants: Sterculia lanceolata and Clausena excavata |
title_fullStr | Leaf transcriptome data of two tropical medicinal plants: Sterculia lanceolata and Clausena excavata |
title_full_unstemmed | Leaf transcriptome data of two tropical medicinal plants: Sterculia lanceolata and Clausena excavata |
title_short | Leaf transcriptome data of two tropical medicinal plants: Sterculia lanceolata and Clausena excavata |
title_sort | leaf transcriptome data of two tropical medicinal plants: sterculia lanceolata and clausena excavata |
topic | Agricultural and Biological Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6717166/ https://www.ncbi.nlm.nih.gov/pubmed/31489347 http://dx.doi.org/10.1016/j.dib.2019.104297 |
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