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Leaf transcriptome data of two tropical medicinal plants: Sterculia lanceolata and Clausena excavata

The data presented in this article are associated to the research articles, “DOI: 10.1007/s11295-019-1348-3”, [1]; and “DOI: 10.1007/s13205-018-1162-x” [2]. Clausena excavata Burm. f. and Sterculia lanceolata Cav. are medicinal tree plants [3,4] native to Southeast Asia and China, and most members o...

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Autores principales: Eom, Seok Hyun, Na, Jong-Kuk
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6717166/
https://www.ncbi.nlm.nih.gov/pubmed/31489347
http://dx.doi.org/10.1016/j.dib.2019.104297
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author Eom, Seok Hyun
Na, Jong-Kuk
author_facet Eom, Seok Hyun
Na, Jong-Kuk
author_sort Eom, Seok Hyun
collection PubMed
description The data presented in this article are associated to the research articles, “DOI: 10.1007/s11295-019-1348-3”, [1]; and “DOI: 10.1007/s13205-018-1162-x” [2]. Clausena excavata Burm. f. and Sterculia lanceolata Cav. are medicinal tree plants [3,4] native to Southeast Asia and China, and most members of both the genus Clausena and the genus Sterculia contain various valuable secondary metabolites with a great potential for drug development. Though many phytochemical studies have been conducted using plant extracts from various parts of these plants [4,5], there are very limited genetic resources available. RNA sequencing of C. excavata and S. lanceolata was conducted using pair-end Illumina HiSeq2500 sequencing system, from which the first de novo transcriptome data were produced for both genus Clausena and Sterculia. Transcriptome shotgun assembly using three different assembly tools [2] generated a total of 16,638 non-redundant contigs (N50, 900 bp) from C. excavata and 7,857 (N50, 423 bp) from S. lanceolata. The data are accessible at NCBI BioProject: PRJNA428402 for C. excavata [2] or PRJNA435648 for S. lanceolata[1].
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spelling pubmed-67171662019-09-05 Leaf transcriptome data of two tropical medicinal plants: Sterculia lanceolata and Clausena excavata Eom, Seok Hyun Na, Jong-Kuk Data Brief Agricultural and Biological Science The data presented in this article are associated to the research articles, “DOI: 10.1007/s11295-019-1348-3”, [1]; and “DOI: 10.1007/s13205-018-1162-x” [2]. Clausena excavata Burm. f. and Sterculia lanceolata Cav. are medicinal tree plants [3,4] native to Southeast Asia and China, and most members of both the genus Clausena and the genus Sterculia contain various valuable secondary metabolites with a great potential for drug development. Though many phytochemical studies have been conducted using plant extracts from various parts of these plants [4,5], there are very limited genetic resources available. RNA sequencing of C. excavata and S. lanceolata was conducted using pair-end Illumina HiSeq2500 sequencing system, from which the first de novo transcriptome data were produced for both genus Clausena and Sterculia. Transcriptome shotgun assembly using three different assembly tools [2] generated a total of 16,638 non-redundant contigs (N50, 900 bp) from C. excavata and 7,857 (N50, 423 bp) from S. lanceolata. The data are accessible at NCBI BioProject: PRJNA428402 for C. excavata [2] or PRJNA435648 for S. lanceolata[1]. Elsevier 2019-08-02 /pmc/articles/PMC6717166/ /pubmed/31489347 http://dx.doi.org/10.1016/j.dib.2019.104297 Text en © 2019 The Author(s) http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Agricultural and Biological Science
Eom, Seok Hyun
Na, Jong-Kuk
Leaf transcriptome data of two tropical medicinal plants: Sterculia lanceolata and Clausena excavata
title Leaf transcriptome data of two tropical medicinal plants: Sterculia lanceolata and Clausena excavata
title_full Leaf transcriptome data of two tropical medicinal plants: Sterculia lanceolata and Clausena excavata
title_fullStr Leaf transcriptome data of two tropical medicinal plants: Sterculia lanceolata and Clausena excavata
title_full_unstemmed Leaf transcriptome data of two tropical medicinal plants: Sterculia lanceolata and Clausena excavata
title_short Leaf transcriptome data of two tropical medicinal plants: Sterculia lanceolata and Clausena excavata
title_sort leaf transcriptome data of two tropical medicinal plants: sterculia lanceolata and clausena excavata
topic Agricultural and Biological Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6717166/
https://www.ncbi.nlm.nih.gov/pubmed/31489347
http://dx.doi.org/10.1016/j.dib.2019.104297
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