Cargando…

New perspectives for viability studies with high-content analysis Raman spectroscopy (HCA-RS)

Raman spectroscopy has been widely used in clinical and molecular biological studies, providing high chemical specificity without the necessity of labels and with little-to-no sample preparation. However, currently performed Raman-based studies of eukaryotic cells are still very laborious and time-c...

Descripción completa

Detalles Bibliográficos
Autores principales: Mondol, Abdullah Saif, Töpfer, Natalie, Rüger, Jan, Neugebauer, Ute, Popp, Jürgen, Schie, Iwan W.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6718400/
https://www.ncbi.nlm.nih.gov/pubmed/31477762
http://dx.doi.org/10.1038/s41598-019-48895-7
_version_ 1783447718362873856
author Mondol, Abdullah Saif
Töpfer, Natalie
Rüger, Jan
Neugebauer, Ute
Popp, Jürgen
Schie, Iwan W.
author_facet Mondol, Abdullah Saif
Töpfer, Natalie
Rüger, Jan
Neugebauer, Ute
Popp, Jürgen
Schie, Iwan W.
author_sort Mondol, Abdullah Saif
collection PubMed
description Raman spectroscopy has been widely used in clinical and molecular biological studies, providing high chemical specificity without the necessity of labels and with little-to-no sample preparation. However, currently performed Raman-based studies of eukaryotic cells are still very laborious and time-consuming, resulting in a low number of sampled cells and questionable statistical validations. Furthermore, the approach requires a trained specialist to perform and analyze the experiments, rendering the method less attractive for most laboratories. In this work, we present a new high-content analysis Raman spectroscopy (HCA-RS) platform that overcomes the current challenges of conventional Raman spectroscopy implementations. HCA-RS allows sampling of a large number of cells under different physiological conditions without any user interaction. The performance of the approach is successfully demonstrated by the development of a Raman-based cell viability assay, i.e., the effect of doxorubicin concentration on monocytic THP-1 cells. A statistical model, principal component analysis combined with support vector machine (PCA-SVM), was found to successfully predict the percentage of viable cells in a mixed population and is in good agreement to results obtained by a standard cell viability assay. This study demonstrates the potential of Raman spectroscopy as a standard high-throughput tool for clinical and biological applications.
format Online
Article
Text
id pubmed-6718400
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-67184002019-09-17 New perspectives for viability studies with high-content analysis Raman spectroscopy (HCA-RS) Mondol, Abdullah Saif Töpfer, Natalie Rüger, Jan Neugebauer, Ute Popp, Jürgen Schie, Iwan W. Sci Rep Article Raman spectroscopy has been widely used in clinical and molecular biological studies, providing high chemical specificity without the necessity of labels and with little-to-no sample preparation. However, currently performed Raman-based studies of eukaryotic cells are still very laborious and time-consuming, resulting in a low number of sampled cells and questionable statistical validations. Furthermore, the approach requires a trained specialist to perform and analyze the experiments, rendering the method less attractive for most laboratories. In this work, we present a new high-content analysis Raman spectroscopy (HCA-RS) platform that overcomes the current challenges of conventional Raman spectroscopy implementations. HCA-RS allows sampling of a large number of cells under different physiological conditions without any user interaction. The performance of the approach is successfully demonstrated by the development of a Raman-based cell viability assay, i.e., the effect of doxorubicin concentration on monocytic THP-1 cells. A statistical model, principal component analysis combined with support vector machine (PCA-SVM), was found to successfully predict the percentage of viable cells in a mixed population and is in good agreement to results obtained by a standard cell viability assay. This study demonstrates the potential of Raman spectroscopy as a standard high-throughput tool for clinical and biological applications. Nature Publishing Group UK 2019-09-02 /pmc/articles/PMC6718400/ /pubmed/31477762 http://dx.doi.org/10.1038/s41598-019-48895-7 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Mondol, Abdullah Saif
Töpfer, Natalie
Rüger, Jan
Neugebauer, Ute
Popp, Jürgen
Schie, Iwan W.
New perspectives for viability studies with high-content analysis Raman spectroscopy (HCA-RS)
title New perspectives for viability studies with high-content analysis Raman spectroscopy (HCA-RS)
title_full New perspectives for viability studies with high-content analysis Raman spectroscopy (HCA-RS)
title_fullStr New perspectives for viability studies with high-content analysis Raman spectroscopy (HCA-RS)
title_full_unstemmed New perspectives for viability studies with high-content analysis Raman spectroscopy (HCA-RS)
title_short New perspectives for viability studies with high-content analysis Raman spectroscopy (HCA-RS)
title_sort new perspectives for viability studies with high-content analysis raman spectroscopy (hca-rs)
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6718400/
https://www.ncbi.nlm.nih.gov/pubmed/31477762
http://dx.doi.org/10.1038/s41598-019-48895-7
work_keys_str_mv AT mondolabdullahsaif newperspectivesforviabilitystudieswithhighcontentanalysisramanspectroscopyhcars
AT topfernatalie newperspectivesforviabilitystudieswithhighcontentanalysisramanspectroscopyhcars
AT rugerjan newperspectivesforviabilitystudieswithhighcontentanalysisramanspectroscopyhcars
AT neugebauerute newperspectivesforviabilitystudieswithhighcontentanalysisramanspectroscopyhcars
AT poppjurgen newperspectivesforviabilitystudieswithhighcontentanalysisramanspectroscopyhcars
AT schieiwanw newperspectivesforviabilitystudieswithhighcontentanalysisramanspectroscopyhcars