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Patient‐based prediction algorithm of relapse after allo‐HSCT for acute Leukemia and its usefulness in the decision‐making process using a machine learning approach
Although allogeneic hematopoietic stem cell transplantation (allo‐HSCT) is a curative therapy for high‐risk acute leukemia (AL), some patients still relapse. Since patients simultaneously have many prognostic factors, difficulties are associated with the construction of a patient‐based prediction al...
Autores principales: | , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6718546/ https://www.ncbi.nlm.nih.gov/pubmed/31305031 http://dx.doi.org/10.1002/cam4.2401 |
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author | Fuse, Kyoko Uemura, Shun Tamura, Suguru Suwabe, Tatsuya Katagiri, Takayuki Tanaka, Tomoyuki Ushiki, Takashi Shibasaki, Yasuhiko Sato, Naoko Yano, Toshio Kuroha, Takashi Hashimoto, Shigeo Furukawa, Tatsuo Narita, Miwako Sone, Hirohito Masuko, Masayoshi |
author_facet | Fuse, Kyoko Uemura, Shun Tamura, Suguru Suwabe, Tatsuya Katagiri, Takayuki Tanaka, Tomoyuki Ushiki, Takashi Shibasaki, Yasuhiko Sato, Naoko Yano, Toshio Kuroha, Takashi Hashimoto, Shigeo Furukawa, Tatsuo Narita, Miwako Sone, Hirohito Masuko, Masayoshi |
author_sort | Fuse, Kyoko |
collection | PubMed |
description | Although allogeneic hematopoietic stem cell transplantation (allo‐HSCT) is a curative therapy for high‐risk acute leukemia (AL), some patients still relapse. Since patients simultaneously have many prognostic factors, difficulties are associated with the construction of a patient‐based prediction algorithm of relapse. The alternating decision tree (ADTree) is a successful classification method that combines decision trees with the predictive accuracy of boosting. It is a component of machine learning (ML) and has the capacity to simultaneously analyze multiple factors. Using ADTree, we attempted to construct a prediction model of leukemia relapse within 1 year of transplantation. With the model of training data (n = 148), prediction accuracy, the AUC of ROC, and the κ‐statistic value were 78.4%, 0.746, and 0.508, respectively. The false positive rate (FPR) of the relapse prediction was as low as 0.134. In an evaluation of the model with validation data (n = 69), prediction accuracy, AUC, and FPR of the relapse prediction were similar at 71.0%, 0.667, and 0.216, respectively. These results suggest that the model is generalized and highly accurate. Furthermore, the output of ADTree may visualize the branch point of treatment. For example, the selection of donor types resulted in different relapse predictions. Therefore, clinicians may change treatment options by referring to the model, thereby improving outcomes. The present results indicate that ML, such as ADTree, will contribute to the decision‐making process in the diversified allo‐HSCT field and be useful for preventing the relapse of leukemia. |
format | Online Article Text |
id | pubmed-6718546 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-67185462019-09-06 Patient‐based prediction algorithm of relapse after allo‐HSCT for acute Leukemia and its usefulness in the decision‐making process using a machine learning approach Fuse, Kyoko Uemura, Shun Tamura, Suguru Suwabe, Tatsuya Katagiri, Takayuki Tanaka, Tomoyuki Ushiki, Takashi Shibasaki, Yasuhiko Sato, Naoko Yano, Toshio Kuroha, Takashi Hashimoto, Shigeo Furukawa, Tatsuo Narita, Miwako Sone, Hirohito Masuko, Masayoshi Cancer Med Clinical Cancer Research Although allogeneic hematopoietic stem cell transplantation (allo‐HSCT) is a curative therapy for high‐risk acute leukemia (AL), some patients still relapse. Since patients simultaneously have many prognostic factors, difficulties are associated with the construction of a patient‐based prediction algorithm of relapse. The alternating decision tree (ADTree) is a successful classification method that combines decision trees with the predictive accuracy of boosting. It is a component of machine learning (ML) and has the capacity to simultaneously analyze multiple factors. Using ADTree, we attempted to construct a prediction model of leukemia relapse within 1 year of transplantation. With the model of training data (n = 148), prediction accuracy, the AUC of ROC, and the κ‐statistic value were 78.4%, 0.746, and 0.508, respectively. The false positive rate (FPR) of the relapse prediction was as low as 0.134. In an evaluation of the model with validation data (n = 69), prediction accuracy, AUC, and FPR of the relapse prediction were similar at 71.0%, 0.667, and 0.216, respectively. These results suggest that the model is generalized and highly accurate. Furthermore, the output of ADTree may visualize the branch point of treatment. For example, the selection of donor types resulted in different relapse predictions. Therefore, clinicians may change treatment options by referring to the model, thereby improving outcomes. The present results indicate that ML, such as ADTree, will contribute to the decision‐making process in the diversified allo‐HSCT field and be useful for preventing the relapse of leukemia. John Wiley and Sons Inc. 2019-07-15 /pmc/articles/PMC6718546/ /pubmed/31305031 http://dx.doi.org/10.1002/cam4.2401 Text en © 2019 The Authors. Cancer Medicine published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Clinical Cancer Research Fuse, Kyoko Uemura, Shun Tamura, Suguru Suwabe, Tatsuya Katagiri, Takayuki Tanaka, Tomoyuki Ushiki, Takashi Shibasaki, Yasuhiko Sato, Naoko Yano, Toshio Kuroha, Takashi Hashimoto, Shigeo Furukawa, Tatsuo Narita, Miwako Sone, Hirohito Masuko, Masayoshi Patient‐based prediction algorithm of relapse after allo‐HSCT for acute Leukemia and its usefulness in the decision‐making process using a machine learning approach |
title | Patient‐based prediction algorithm of relapse after allo‐HSCT for acute Leukemia and its usefulness in the decision‐making process using a machine learning approach |
title_full | Patient‐based prediction algorithm of relapse after allo‐HSCT for acute Leukemia and its usefulness in the decision‐making process using a machine learning approach |
title_fullStr | Patient‐based prediction algorithm of relapse after allo‐HSCT for acute Leukemia and its usefulness in the decision‐making process using a machine learning approach |
title_full_unstemmed | Patient‐based prediction algorithm of relapse after allo‐HSCT for acute Leukemia and its usefulness in the decision‐making process using a machine learning approach |
title_short | Patient‐based prediction algorithm of relapse after allo‐HSCT for acute Leukemia and its usefulness in the decision‐making process using a machine learning approach |
title_sort | patient‐based prediction algorithm of relapse after allo‐hsct for acute leukemia and its usefulness in the decision‐making process using a machine learning approach |
topic | Clinical Cancer Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6718546/ https://www.ncbi.nlm.nih.gov/pubmed/31305031 http://dx.doi.org/10.1002/cam4.2401 |
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