Cargando…

A Computational Analysis of Alternative Splicing across Mammalian Tissues Reveals Circadian and Ultradian Rhythms in Splicing Events

Mounting evidence points to a role of the circadian clock in the temporal regulation of post-transcriptional processes in mammals, including alternative splicing (AS). In this study, we carried out a computational analysis of circadian and ultradian rhythms on the transcriptome level to characterise...

Descripción completa

Detalles Bibliográficos
Autores principales:	El-Athman, Rukeia, Knezevic, Dora, Fuhr, Luise, Relógio, Angela
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2019
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6721216/ https://www.ncbi.nlm.nih.gov/pubmed/31443305 http://dx.doi.org/10.3390/ijms20163977

Ejemplares similares

A Systems-Level Analysis Reveals Circadian Regulation of Splicing in Colorectal Cancer
por: El-Athman, Rukeia, et al.
Publicado: (2018)

Episodic Ultradian Events—Ultradian Rhythms
por: Goh, Grace H., et al.
Publicado: (2019)

A bioinformatic analysis identifies circadian expression of splicing factors and time-dependent alternative splicing events in the HD-MY-Z cell line
por: Genov, Nikolai, et al.
Publicado: (2019)

Wavelet analysis of circadian and ultradian behavioral rhythms
por: Leise, Tanya L
Publicado: (2013)

Circadian and ultradian oscillations in bilateral rhythms of the crayfish chelipeds
por: Viccon-Pale, José A.
Publicado: (2022)

Analysis of the Circadian Regulation of Cancer Hallmarks by a Cross-Platform Study of Colorectal Cancer Time-Series Data Reveals an Association with Genes Involved in Huntington’s Disease
por: Yalçin, Müge, et al.
Publicado: (2020)

The Ink4a/Arf locus operates as a regulator of the circadian clock modulating RAS activity
por: El-Athman, Rukeia, et al.
Publicado: (2017)

The Interplay between Colon Cancer Cells and Tumour-Associated Stromal Cells Impacts the Biological Clock and Enhances Malignant Phenotypes
por: Fuhr, Luise, et al.
Publicado: (2019)

A model for generating circadian rhythm by coupling ultradian oscillators
por: Paetkau, Verner, et al.
Publicado: (2006)

A stochastic model for circadian rhythms from coupled ultradian oscillators
por: Edwards, Roderick, et al.
Publicado: (2007)

Circadian systems biology: When time matters
por: Fuhr, Luise, et al.
Publicado: (2015)

Assembly of a Comprehensive Regulatory Network for the Mammalian Circadian Clock: A Bioinformatics Approach
por: Lehmann, Robert, et al.
Publicado: (2015)

The Circadian Clock Regulates Metabolic Phenotype Rewiring Via HKDC1 and Modulates Tumor Progression and Drug Response in Colorectal Cancer
por: Fuhr, Luise, et al.
Publicado: (2018)

A new ultradian rhythm in mammalian cell dry mass observed by holography
por: Ghenim, Lamya, et al.
Publicado: (2021)

Circadian and ultradian rhythms of clock gene expression in the suprachiasmatic nucleus of freely moving mice
por: Ono, Daisuke, et al.
Publicado: (2015)

Unmasking ultradian rhythms in gene expression
por: van der Veen, Daan R., et al.
Publicado: (2017)

Ultradian Rhythms in the Transcriptome of Neurospora crassa
por: Ananthasubramaniam, Bharath, et al.
Publicado: (2018)

Systematic Analysis of Mouse Genome Reveals Distinct Evolutionary and Functional Properties Among Circadian and Ultradian Genes
por: Castellana, Stefano, et al.
Publicado: (2018)

The fractal organization of ultradian rhythms in avian behavior
por: Guzmán, Diego A., et al.
Publicado: (2017)

Circadian and Ultradian Rhythms of Free Glucocorticoid Hormone Are Highly Synchronized between the Blood, the Subcutaneous Tissue, and the Brain
por: Qian, Xiaoxiao, et al.
Publicado: (2012)

Transcriptome analysis of clock disrupted cancer cells reveals differential alternative splicing of cancer hallmarks genes
por: Malhan, Deeksha, et al.
Publicado: (2022)

Physiological state co-regulates thousands of mammalian mRNA splicing events at tandem splice sites and alternative exons
por: Szafranski, Karol, et al.
Publicado: (2014)

Alternative splicing during mammalian organ development
por: Mazin, Pavel V., et al.
Publicado: (2021)

Alternative Splicing Events and Splicing Factors Are Prognostic in Adrenocortical Carcinoma
por: Lv, Jian, et al.
Publicado: (2020)

Antiproliferative Effects of Cynara Cardunculus in Colorectal Cancer Cells Are Modulated by the Circadian Clock
por: Fuhr, Luise, et al.
Publicado: (2022)

Photoperiodic Influences on Ultradian Rhythms of Male Siberian Hamsters
por: Prendergast, Brian J., et al.
Publicado: (2012)

Sperm physiology varies according to ultradian and infradian rhythms
por: Moreno-Irusta, Ayelén, et al.
Publicado: (2019)

Coupling-dependent metabolic ultradian rhythms in confluent cells
por: Yang, Shuzhang, et al.
Publicado: (2022)

Conserved and species-specific alternative splicing in mammalian genomes
por: Nurtdinov, Ramil N, et al.
Publicado: (2007)

Regulation of alternative splicing by the circadian clock and food related cues
por: McGlincy, Nicholas J, et al.
Publicado: (2012)

Striking circadian neuron diversity and cycling of Drosophila alternative splicing
por: Wang, Qingqing, et al.
Publicado: (2018)

The emerging importance of ultradian glucocorticoid rhythms within metabolic pathology
por: Flynn, Benjamin P., et al.
Publicado: (2018)

Ultradian calcium rhythms in the paraventricular nucleus and subparaventricular zone in the hypothalamus
por: Wu, Yu-Er, et al.
Publicado: (2018)

Ultradian rhythms of AKT phosphorylation and gene expression emerge in the absence of the circadian clock components Per1 and Per2
por: Aviram, Rona, et al.
Publicado: (2021)

Preservation of ∼12-h ultradian rhythms of gene expression of mRNA and protein metabolism in the absence of canonical circadian clock
por: Zhu, Bokai, et al.
Publicado: (2023)

Preservation of ~12-hour ultradian rhythms of gene expression of mRNA and protein metabolism in the absence of canonical circadian clock
por: Zhu, Bokai, et al.
Publicado: (2023)

Identification of recurrent regulated alternative splicing events across human solid tumors
por: Danan-Gotthold, Miri, et al.
Publicado: (2015)

Strategies for Identifying RNA Splicing Regulatory Motifs and Predicting Alternative Splicing Events
por: Holste, Dirk, et al.
Publicado: (2008)

Deep Splicing Code: Classifying Alternative Splicing Events Using Deep Learning
por: Louadi, Zakaria, et al.
Publicado: (2019)

Variation in alternative splicing across human tissues
por: Yeo, Gene, et al.
Publicado: (2004)

Cannot write session to /tmp/vufind_sessions/sess_590hp9i37tcdjjogl6fum8u3qh