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Assessing the Protective Metabolome Using Machine Learning in World Trade Center Particulate Exposed Firefighters at Risk for Lung Injury
The metabolome of World Trade Center (WTC) particulate matter (PM) exposure has yet to be fully defined and may yield information that will further define bioactive pathways relevant to lung injury. A subset of Fire Department of New York firefighters demonstrated resistance to subsequent loss of lu...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6722247/ https://www.ncbi.nlm.nih.gov/pubmed/31481674 http://dx.doi.org/10.1038/s41598-019-48458-w |
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author | Crowley, George Kwon, Sophia Ostrofsky, Dean F. Clementi, Emily A. Haider, Syed Hissam Caraher, Erin J. Lam, Rachel St-Jules, David E. Liu, Mengling Prezant, David J. Nolan, Anna |
author_facet | Crowley, George Kwon, Sophia Ostrofsky, Dean F. Clementi, Emily A. Haider, Syed Hissam Caraher, Erin J. Lam, Rachel St-Jules, David E. Liu, Mengling Prezant, David J. Nolan, Anna |
author_sort | Crowley, George |
collection | PubMed |
description | The metabolome of World Trade Center (WTC) particulate matter (PM) exposure has yet to be fully defined and may yield information that will further define bioactive pathways relevant to lung injury. A subset of Fire Department of New York firefighters demonstrated resistance to subsequent loss of lung function. We intend to characterize the metabolome of never smoking WTC-exposed firefighters, stratified by resistance to WTC-Lung Injury (WTC-LI) to determine metabolite pathways significant in subjects resistant to the loss of lung function. The global serum metabolome was determined in those resistant to WTC-LI and controls (n = 15 in each). Metabolites most important to class separation (top 5% by Random Forest (RF) of 594 qualified metabolites) included elevated amino acid and long-chain fatty acid metabolites, and reduced hexose monophosphate shunt metabolites in the resistant cohort. RF using the refined metabolic profile was able to classify cases and controls with an estimated success rate of 93.3%, and performed similarly upon cross-validation. Agglomerative hierarchical clustering identified potential influential pathways of resistance to the development of WTC-LI. These pathways represent potential therapeutic targets and warrant further research. |
format | Online Article Text |
id | pubmed-6722247 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-67222472019-09-18 Assessing the Protective Metabolome Using Machine Learning in World Trade Center Particulate Exposed Firefighters at Risk for Lung Injury Crowley, George Kwon, Sophia Ostrofsky, Dean F. Clementi, Emily A. Haider, Syed Hissam Caraher, Erin J. Lam, Rachel St-Jules, David E. Liu, Mengling Prezant, David J. Nolan, Anna Sci Rep Article The metabolome of World Trade Center (WTC) particulate matter (PM) exposure has yet to be fully defined and may yield information that will further define bioactive pathways relevant to lung injury. A subset of Fire Department of New York firefighters demonstrated resistance to subsequent loss of lung function. We intend to characterize the metabolome of never smoking WTC-exposed firefighters, stratified by resistance to WTC-Lung Injury (WTC-LI) to determine metabolite pathways significant in subjects resistant to the loss of lung function. The global serum metabolome was determined in those resistant to WTC-LI and controls (n = 15 in each). Metabolites most important to class separation (top 5% by Random Forest (RF) of 594 qualified metabolites) included elevated amino acid and long-chain fatty acid metabolites, and reduced hexose monophosphate shunt metabolites in the resistant cohort. RF using the refined metabolic profile was able to classify cases and controls with an estimated success rate of 93.3%, and performed similarly upon cross-validation. Agglomerative hierarchical clustering identified potential influential pathways of resistance to the development of WTC-LI. These pathways represent potential therapeutic targets and warrant further research. Nature Publishing Group UK 2019-09-03 /pmc/articles/PMC6722247/ /pubmed/31481674 http://dx.doi.org/10.1038/s41598-019-48458-w Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Crowley, George Kwon, Sophia Ostrofsky, Dean F. Clementi, Emily A. Haider, Syed Hissam Caraher, Erin J. Lam, Rachel St-Jules, David E. Liu, Mengling Prezant, David J. Nolan, Anna Assessing the Protective Metabolome Using Machine Learning in World Trade Center Particulate Exposed Firefighters at Risk for Lung Injury |
title | Assessing the Protective Metabolome Using Machine Learning in World Trade Center Particulate Exposed Firefighters at Risk for Lung Injury |
title_full | Assessing the Protective Metabolome Using Machine Learning in World Trade Center Particulate Exposed Firefighters at Risk for Lung Injury |
title_fullStr | Assessing the Protective Metabolome Using Machine Learning in World Trade Center Particulate Exposed Firefighters at Risk for Lung Injury |
title_full_unstemmed | Assessing the Protective Metabolome Using Machine Learning in World Trade Center Particulate Exposed Firefighters at Risk for Lung Injury |
title_short | Assessing the Protective Metabolome Using Machine Learning in World Trade Center Particulate Exposed Firefighters at Risk for Lung Injury |
title_sort | assessing the protective metabolome using machine learning in world trade center particulate exposed firefighters at risk for lung injury |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6722247/ https://www.ncbi.nlm.nih.gov/pubmed/31481674 http://dx.doi.org/10.1038/s41598-019-48458-w |
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