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Characterization of Salinivibrio socompensis sp. nov., A New Halophilic Bacterium Isolated from the High-Altitude Hypersaline Lake Socompa, Argentina
The genus Salinivibrio belongs to the family Vibrionaceae and includes Gram-stain-negative, motile by a polar flagellum, and facultatively anaerobic curved rods. They are halophilic bacteria commonly found in hypersaline aquatic habitats and salted foods. This genus includes five species and two sub...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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MDPI
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6723482/ https://www.ncbi.nlm.nih.gov/pubmed/31387286 http://dx.doi.org/10.3390/microorganisms7080241 |
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author | Galisteo, Cristina Sánchez-Porro, Cristina de la Haba, Rafael R. López-Hermoso, Clara Fernández, Ana B. Farias, María E. Ventosa, Antonio |
author_facet | Galisteo, Cristina Sánchez-Porro, Cristina de la Haba, Rafael R. López-Hermoso, Clara Fernández, Ana B. Farias, María E. Ventosa, Antonio |
author_sort | Galisteo, Cristina |
collection | PubMed |
description | The genus Salinivibrio belongs to the family Vibrionaceae and includes Gram-stain-negative, motile by a polar flagellum, and facultatively anaerobic curved rods. They are halophilic bacteria commonly found in hypersaline aquatic habitats and salted foods. This genus includes five species and two subspecies. A presumed novel species, strain S35(T), was previously isolated from the high-altitude volcanic, alkaline, and saline lake Socompa (Argentinean Andes). In this study we carried out a complete taxonomic characterization of strain S35(T), including the 16S rRNA gene sequence and core-genome analysis, the average nucleotide identity (ANIb, ANIm, and orthoANI), and in silico DNA–DNA hybridization (GGDC), as well as the phenotypic and chemotaxonomic characterization. It grew at 3%–20% (w/v) NaCl, pH 6–10, and 10–42 °C, with optimum growth at 7.0%–7.5% (w/v) NaCl, pH 8.0, and 37 °C, respectively. Strain S35(T) was oxidase- and catalase-positive, able to produce acid from D-glucose and other carbohydrates. Hydrolysis of DNA, methyl red test, and nitrate and nitrite reduction were positive. Its main fatty acids were C(16:0), C(16:1) ω7c and C(16:1) ω6c, and C(18:1) ω7c and/or C(18:1) ω6c. ANI, GGDC, and core-genome analysis determined that strain S35(T) constitutes a novel species of the genus Salinivibrio, for which the name Salinivibrio socompensis sp. nov. is proposed. The type strain is S35(T) (= CECT 9634(T) = BNM 0535(T)). |
format | Online Article Text |
id | pubmed-6723482 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-67234822019-09-10 Characterization of Salinivibrio socompensis sp. nov., A New Halophilic Bacterium Isolated from the High-Altitude Hypersaline Lake Socompa, Argentina Galisteo, Cristina Sánchez-Porro, Cristina de la Haba, Rafael R. López-Hermoso, Clara Fernández, Ana B. Farias, María E. Ventosa, Antonio Microorganisms Article The genus Salinivibrio belongs to the family Vibrionaceae and includes Gram-stain-negative, motile by a polar flagellum, and facultatively anaerobic curved rods. They are halophilic bacteria commonly found in hypersaline aquatic habitats and salted foods. This genus includes five species and two subspecies. A presumed novel species, strain S35(T), was previously isolated from the high-altitude volcanic, alkaline, and saline lake Socompa (Argentinean Andes). In this study we carried out a complete taxonomic characterization of strain S35(T), including the 16S rRNA gene sequence and core-genome analysis, the average nucleotide identity (ANIb, ANIm, and orthoANI), and in silico DNA–DNA hybridization (GGDC), as well as the phenotypic and chemotaxonomic characterization. It grew at 3%–20% (w/v) NaCl, pH 6–10, and 10–42 °C, with optimum growth at 7.0%–7.5% (w/v) NaCl, pH 8.0, and 37 °C, respectively. Strain S35(T) was oxidase- and catalase-positive, able to produce acid from D-glucose and other carbohydrates. Hydrolysis of DNA, methyl red test, and nitrate and nitrite reduction were positive. Its main fatty acids were C(16:0), C(16:1) ω7c and C(16:1) ω6c, and C(18:1) ω7c and/or C(18:1) ω6c. ANI, GGDC, and core-genome analysis determined that strain S35(T) constitutes a novel species of the genus Salinivibrio, for which the name Salinivibrio socompensis sp. nov. is proposed. The type strain is S35(T) (= CECT 9634(T) = BNM 0535(T)). MDPI 2019-08-05 /pmc/articles/PMC6723482/ /pubmed/31387286 http://dx.doi.org/10.3390/microorganisms7080241 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Galisteo, Cristina Sánchez-Porro, Cristina de la Haba, Rafael R. López-Hermoso, Clara Fernández, Ana B. Farias, María E. Ventosa, Antonio Characterization of Salinivibrio socompensis sp. nov., A New Halophilic Bacterium Isolated from the High-Altitude Hypersaline Lake Socompa, Argentina |
title | Characterization of Salinivibrio socompensis sp. nov., A New Halophilic Bacterium Isolated from the High-Altitude Hypersaline Lake Socompa, Argentina |
title_full | Characterization of Salinivibrio socompensis sp. nov., A New Halophilic Bacterium Isolated from the High-Altitude Hypersaline Lake Socompa, Argentina |
title_fullStr | Characterization of Salinivibrio socompensis sp. nov., A New Halophilic Bacterium Isolated from the High-Altitude Hypersaline Lake Socompa, Argentina |
title_full_unstemmed | Characterization of Salinivibrio socompensis sp. nov., A New Halophilic Bacterium Isolated from the High-Altitude Hypersaline Lake Socompa, Argentina |
title_short | Characterization of Salinivibrio socompensis sp. nov., A New Halophilic Bacterium Isolated from the High-Altitude Hypersaline Lake Socompa, Argentina |
title_sort | characterization of salinivibrio socompensis sp. nov., a new halophilic bacterium isolated from the high-altitude hypersaline lake socompa, argentina |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6723482/ https://www.ncbi.nlm.nih.gov/pubmed/31387286 http://dx.doi.org/10.3390/microorganisms7080241 |
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