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GWEHS: A Genome-Wide Effect Sizes and Heritability Screener

During the last decade, there has been a huge development of Genome-Wide Association Studies (GWAS), and thousands of loci associated to complex traits have been detected. These efforts have led to the creation of public databases of GWAS results, making a huge source of information available on the...

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Autores principales: López-Cortegano, Eugenio, Caballero, Armando
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6723621/
https://www.ncbi.nlm.nih.gov/pubmed/31344961
http://dx.doi.org/10.3390/genes10080558
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author López-Cortegano, Eugenio
Caballero, Armando
author_facet López-Cortegano, Eugenio
Caballero, Armando
author_sort López-Cortegano, Eugenio
collection PubMed
description During the last decade, there has been a huge development of Genome-Wide Association Studies (GWAS), and thousands of loci associated to complex traits have been detected. These efforts have led to the creation of public databases of GWAS results, making a huge source of information available on the genetic background of many diverse traits. Here we present GWEHS (Genome-Wide Effect size and Heritability Screener), an open-source online application to screen loci associated to human complex traits and diseases from the NHGRI-EBI GWAS Catalog. This application provides a way to explore the distribution of effect sizes of loci affecting these traits, as well as their contribution to heritability. Furthermore, it allows for making predictions on the change in the expected mean effect size, as well as in the heritability as new loci are found. The application enables inferences on whether the additive contribution of loci expected to be discovered in the future will be able to explain the estimates of familial heritability for the different traits. We illustrate the use of this tool, compare some of the results obtained with those from a previous meta-analysis, and discuss its uses and limitations.
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spelling pubmed-67236212019-09-10 GWEHS: A Genome-Wide Effect Sizes and Heritability Screener López-Cortegano, Eugenio Caballero, Armando Genes (Basel) Article During the last decade, there has been a huge development of Genome-Wide Association Studies (GWAS), and thousands of loci associated to complex traits have been detected. These efforts have led to the creation of public databases of GWAS results, making a huge source of information available on the genetic background of many diverse traits. Here we present GWEHS (Genome-Wide Effect size and Heritability Screener), an open-source online application to screen loci associated to human complex traits and diseases from the NHGRI-EBI GWAS Catalog. This application provides a way to explore the distribution of effect sizes of loci affecting these traits, as well as their contribution to heritability. Furthermore, it allows for making predictions on the change in the expected mean effect size, as well as in the heritability as new loci are found. The application enables inferences on whether the additive contribution of loci expected to be discovered in the future will be able to explain the estimates of familial heritability for the different traits. We illustrate the use of this tool, compare some of the results obtained with those from a previous meta-analysis, and discuss its uses and limitations. MDPI 2019-07-24 /pmc/articles/PMC6723621/ /pubmed/31344961 http://dx.doi.org/10.3390/genes10080558 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
López-Cortegano, Eugenio
Caballero, Armando
GWEHS: A Genome-Wide Effect Sizes and Heritability Screener
title GWEHS: A Genome-Wide Effect Sizes and Heritability Screener
title_full GWEHS: A Genome-Wide Effect Sizes and Heritability Screener
title_fullStr GWEHS: A Genome-Wide Effect Sizes and Heritability Screener
title_full_unstemmed GWEHS: A Genome-Wide Effect Sizes and Heritability Screener
title_short GWEHS: A Genome-Wide Effect Sizes and Heritability Screener
title_sort gwehs: a genome-wide effect sizes and heritability screener
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6723621/
https://www.ncbi.nlm.nih.gov/pubmed/31344961
http://dx.doi.org/10.3390/genes10080558
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