Cargando…

rMSIKeyIon: An Ion Filtering R Package for Untargeted Analysis of Metabolomic LDI-MS Images

Many MALDI-MS imaging experiments make a case versus control studies of different tissue regions in order to highlight significant compounds affected by the variables of study. This is a challenge because the tissue samples to be compared come from different biological entities, and therefore they e...

Descripción completa

Detalles Bibliográficos
Autores principales:	del Castillo, Esteban, Sementé, Lluc, Torres, Sònia, Ràfols, Pere, Ramírez, Noelia, Martins-Green, Manuela, Santafe, Manel, Correig, Xavier
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2019
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6724114/ https://www.ncbi.nlm.nih.gov/pubmed/31382415 http://dx.doi.org/10.3390/metabo9080162

Ejemplares similares

rMSIcleanup: an open-source tool for matrix-related peak annotation in mass spectrometry imaging and its application to silver-assisted laser desorption/ionization
por: Baquer, Gerard, et al.
Publicado: (2020)

Raman2imzML converts Raman imaging data into the standard mass spectrometry imaging format
por: Iakab, Stefania Alexandra, et al.
Publicado: (2020)

rMSIfragment: improving MALDI-MSI lipidomics through automated in-source fragment annotation
por: Baquer, Gerard, et al.
Publicado: (2023)

Automated Annotation of Untargeted All-Ion Fragmentation LC–MS Metabolomics Data with MetaboAnnotatoR
por: Graça, Gonçalo, et al.
Publicado: (2022)

Amanida: an R package for meta-analysis of metabolomics non-integral data
por: Llambrich, Maria, et al.
Publicado: (2021)

Mechanisms of Nanophase-Induced Desorption in LDI-MS. A Short Review
por: Picca, Rosaria Anna, et al.
Publicado: (2017)

Silver Nanostructured Substrates in LDI-MS of Low Molecular Weight Compounds
por: Sagandykova, Gulyaim, et al.
Publicado: (2022)

Genetic architecture of limit dextrinase inhibitor (LDI) activity in Tibetan wild barley
por: Huang, Yuqing, et al.
Publicado: (2014)

Semi-Automated Data Analysis for Ion-Selective Electrodes and Arrays Using the R Package ISEtools
por: Dillingham, Peter W., et al.
Publicado: (2019)

Right in two: capabilities of ion mobility spectrometry for untargeted metabolomics
por: Moses, Tessa, et al.
Publicado: (2023)

Perspective on Multimodal Imaging Techniques Coupling Mass Spectrometry and Vibrational Spectroscopy: Picturing the Best of Both Worlds
por: Iakab, Stefania Alexandra, et al.
Publicado: (2021)

The influence of age, anthropometric and metabolic variables on LDI(FLARE) and corneal confocal microscopy in healthy individuals
por: Sharma, Sanjeev, et al.
Publicado: (2018)

Ion Selectivity in the Selectivity Filters of Acid-Sensing Ion Channels
por: Dudev, Todor, et al.
Publicado: (2015)

Assessing the potential of sputtered gold nanolayers in mass spectrometry imaging for metabolomics applications
por: Ràfols, Pere, et al.
Publicado: (2018)

An R Package for Multitrait and Multienvironment Data with the Item-Based Collaborative Filtering Algorithm
por: Montesinos-López, Osval A., et al.
Publicado: (2018)

iq: an R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
por: Pham, Thang V, et al.
Publicado: (2020)

Ion permeation through neuronal nAChR ion channel
por: Krüger, Jens, et al.
Publicado: (2010)

Benzimidazole, coumrindione and flavone derivatives as alternate UV laser desorption ionization (LDI) matrices for peptides analysis
por: Musharraf, Syed Ghulam, et al.
Publicado: (2013)

Spatial mapping of lichen specialized metabolites using LDI-MSI: chemical ecology issues for Ophioparma ventosa
por: Le Pogam, Pierre, et al.
Publicado: (2016)

R packages
por: Wickham, Hadley
Publicado: (2015)

BoolFilter: an R package for estimation and identification of partially-observed Boolean dynamical systems
por: Mcclenny, Levi D., et al.
Publicado: (2017)

SPUTNIK: an R package for filtering of spatially related peaks in mass spectrometry imaging data
por: Inglese, Paolo, et al.
Publicado: (2019)

VariantscanR: an R-package as a clinical tool for variant filtering of known phenotype-associated variants in domestic animals
por: Boeykens, Fréderique, et al.
Publicado: (2023)

Filtering procedures for untargeted LC-MS metabolomics data
por: Schiffman, Courtney, et al.
Publicado: (2019)

Photodegradation of Stearic Acid Adsorbed on Superhydrophilic TiO(2) Surface: In Situ FT-IR and LDI Study
por: Smirnova, Natalia, et al.
Publicado: (2015)

Ion mobility mass spectrometry enhances low-abundance species detection in untargeted lipidomics
por: Basit, Abdul, et al.
Publicado: (2016)

A mass spectrum-oriented computational method for ion mobility-resolved untargeted metabolomics
por: Luo, Mingdu, et al.
Publicado: (2023)

Biological Filtering and Substrate Promiscuity Prediction for Annotating Untargeted Metabolomics
por: Hassanpour, Neda, et al.
Publicado: (2020)

rSalvador: An R Package for the Fluctuation Experiment
por: Zheng, Qi
Publicado: (2017)

Ion mobility collision cross-section atlas for known and unknown metabolite annotation in untargeted metabolomics
por: Zhou, Zhiwei, et al.
Publicado: (2020)

Direct Detection of Bound Ammonium Ions in the Selectivity Filter of Ion Channels by Solid-State NMR
por: Öster, Carl, et al.
Publicado: (2022)

R&D for the development of negative ion beams of halogens
por: Menna, Mariano, et al.
Publicado: (2008)

The ion-filter partial pressure gauge: a proposal
por: Jones, E
Publicado: (1966)

The ion-filter partial pressure gauge, a proposal
por: Jones, E
Publicado: (1966)

Spatially resolved in vivo plant metabolomics by laser ablation-based mass spectrometry imaging (MSI) techniques: LDI-MSI and LAESI
por: Bartels, Benjamin, et al.
Publicado: (2015)

6-Amidopyrene as a label-assisted laser desorption/ionization (LA-LDI) enhancing tag: development of photoaffinity pyrene derivative
por: Yoneda, Kozo, et al.
Publicado: (2015)

Serum metabolomics detected by LDI‐TOF‐MS can be used to distinguish between diabetic patients with and without diabetic kidney disease
por: Qian, Fengmei, et al.
Publicado: (2023)

Writing code for R packages
por: Wickham, Hadley, et al.
Publicado: (2016)

rCUR: an R package for CUR matrix decomposition
por: Bodor, András, et al.
Publicado: (2012)

perfectphyloR: An R package for reconstructing perfect phylogenies
por: Karunarathna, Charith B., et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_ipaj0eojqaa4bma3qtqnd0l2qv