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The many flavours of halogen bonds – message from experimental electron density and Raman spectroscopy
Experimental electron-density studies based on high-resolution diffraction experiments allow halogen bonds between heavy halogens to be classified. The topological properties of the electron density in Cl⋯Cl contacts vary smoothly as a function of the interaction distance. The situation is less str...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6727171/ https://www.ncbi.nlm.nih.gov/pubmed/31484805 http://dx.doi.org/10.1107/S205322961901132X |
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author | Wang, Ruimin George, Janine Potts, Shannon Kimberly Kremer, Marius Dronskowski, Richard Englert, Ulli |
author_facet | Wang, Ruimin George, Janine Potts, Shannon Kimberly Kremer, Marius Dronskowski, Richard Englert, Ulli |
author_sort | Wang, Ruimin |
collection | PubMed |
description | Experimental electron-density studies based on high-resolution diffraction experiments allow halogen bonds between heavy halogens to be classified. The topological properties of the electron density in Cl⋯Cl contacts vary smoothly as a function of the interaction distance. The situation is less straightforward for halogen bonds between iodine and small electronegative nucleophiles, such as nitrogen or oxygen, where the electron density in the bond critical point does not simply increase for shorter distances. The number of successful charge–density studies involving iodine is small, but at least individual examples for three cases have been observed. (a) Very short halogen bonds between electron-rich nucleophiles and heavy halogen atoms resemble three-centre–four-electron bonds, with a rather symmetric heavy halogen and without an appreciable σ hole. (b) For a narrow intermediate range of halogen bonds, the asymmetric electronic situation for the heavy halogen with a pronounced σ hole leads to rather low electron density in the (3,−1) critical point of the halogen bond; the properties of this bond critical point cannot fully describe the nature of the associated interaction. (c) For longer and presumably weaker contacts, the electron density in the halogen bond critical point is only to a minor extent reduced by the presence of the σ hole and hence may be higher than in the aforementioned case. In addition to the electron density and its derived properties, the halogen–carbon bond distance opposite to the σ hole and the Raman frequency for the associated vibration emerge as alternative criteria to gauge the halogen-bond strength. We find exceptionally long C—I distances for tetrafluorodiiodobenzene molecules in cocrystals with short halogen bonds and a significant red shift for their Raman vibrations. |
format | Online Article Text |
id | pubmed-6727171 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-67271712019-09-09 The many flavours of halogen bonds – message from experimental electron density and Raman spectroscopy Wang, Ruimin George, Janine Potts, Shannon Kimberly Kremer, Marius Dronskowski, Richard Englert, Ulli Acta Crystallogr C Struct Chem Feature Articles Experimental electron-density studies based on high-resolution diffraction experiments allow halogen bonds between heavy halogens to be classified. The topological properties of the electron density in Cl⋯Cl contacts vary smoothly as a function of the interaction distance. The situation is less straightforward for halogen bonds between iodine and small electronegative nucleophiles, such as nitrogen or oxygen, where the electron density in the bond critical point does not simply increase for shorter distances. The number of successful charge–density studies involving iodine is small, but at least individual examples for three cases have been observed. (a) Very short halogen bonds between electron-rich nucleophiles and heavy halogen atoms resemble three-centre–four-electron bonds, with a rather symmetric heavy halogen and without an appreciable σ hole. (b) For a narrow intermediate range of halogen bonds, the asymmetric electronic situation for the heavy halogen with a pronounced σ hole leads to rather low electron density in the (3,−1) critical point of the halogen bond; the properties of this bond critical point cannot fully describe the nature of the associated interaction. (c) For longer and presumably weaker contacts, the electron density in the halogen bond critical point is only to a minor extent reduced by the presence of the σ hole and hence may be higher than in the aforementioned case. In addition to the electron density and its derived properties, the halogen–carbon bond distance opposite to the σ hole and the Raman frequency for the associated vibration emerge as alternative criteria to gauge the halogen-bond strength. We find exceptionally long C—I distances for tetrafluorodiiodobenzene molecules in cocrystals with short halogen bonds and a significant red shift for their Raman vibrations. International Union of Crystallography 2019-08-22 /pmc/articles/PMC6727171/ /pubmed/31484805 http://dx.doi.org/10.1107/S205322961901132X Text en © Wang et al. 2019 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Feature Articles Wang, Ruimin George, Janine Potts, Shannon Kimberly Kremer, Marius Dronskowski, Richard Englert, Ulli The many flavours of halogen bonds – message from experimental electron density and Raman spectroscopy |
title | The many flavours of halogen bonds – message from experimental electron density and Raman spectroscopy |
title_full | The many flavours of halogen bonds – message from experimental electron density and Raman spectroscopy |
title_fullStr | The many flavours of halogen bonds – message from experimental electron density and Raman spectroscopy |
title_full_unstemmed | The many flavours of halogen bonds – message from experimental electron density and Raman spectroscopy |
title_short | The many flavours of halogen bonds – message from experimental electron density and Raman spectroscopy |
title_sort | many flavours of halogen bonds – message from experimental electron density and raman spectroscopy |
topic | Feature Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6727171/ https://www.ncbi.nlm.nih.gov/pubmed/31484805 http://dx.doi.org/10.1107/S205322961901132X |
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