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Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance
[Image: see text] Biological membranes are tricky to investigate. They are complex in terms of molecular composition and structure, functional over a wide range of time scales, and characterized by nonequilibrium conditions. Because of all of these features, simulations are a great technique to stud...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American
Chemical Society
2019
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6727218/ https://www.ncbi.nlm.nih.gov/pubmed/30859819 http://dx.doi.org/10.1021/acs.chemrev.8b00538 |
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author | Enkavi, Giray Javanainen, Matti Kulig, Waldemar Róg, Tomasz Vattulainen, Ilpo |
author_facet | Enkavi, Giray Javanainen, Matti Kulig, Waldemar Róg, Tomasz Vattulainen, Ilpo |
author_sort | Enkavi, Giray |
collection | PubMed |
description | [Image: see text] Biological membranes are tricky to investigate. They are complex in terms of molecular composition and structure, functional over a wide range of time scales, and characterized by nonequilibrium conditions. Because of all of these features, simulations are a great technique to study biomembrane behavior. A significant part of the functional processes in biological membranes takes place at the molecular level; thus computer simulations are the method of choice to explore how their properties emerge from specific molecular features and how the interplay among the numerous molecules gives rise to function over spatial and time scales larger than the molecular ones. In this review, we focus on this broad theme. We discuss the current state-of-the-art of biomembrane simulations that, until now, have largely focused on a rather narrow picture of the complexity of the membranes. Given this, we also discuss the challenges that we should unravel in the foreseeable future. Numerous features such as the actin-cytoskeleton network, the glycocalyx network, and nonequilibrium transport under ATP-driven conditions have so far received very little attention; however, the potential of simulations to solve them would be exceptionally high. A major milestone for this research would be that one day we could say that computer simulations genuinely research biological membranes, not just lipid bilayers. |
format | Online Article Text |
id | pubmed-6727218 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | American
Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-67272182019-09-06 Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance Enkavi, Giray Javanainen, Matti Kulig, Waldemar Róg, Tomasz Vattulainen, Ilpo Chem Rev [Image: see text] Biological membranes are tricky to investigate. They are complex in terms of molecular composition and structure, functional over a wide range of time scales, and characterized by nonequilibrium conditions. Because of all of these features, simulations are a great technique to study biomembrane behavior. A significant part of the functional processes in biological membranes takes place at the molecular level; thus computer simulations are the method of choice to explore how their properties emerge from specific molecular features and how the interplay among the numerous molecules gives rise to function over spatial and time scales larger than the molecular ones. In this review, we focus on this broad theme. We discuss the current state-of-the-art of biomembrane simulations that, until now, have largely focused on a rather narrow picture of the complexity of the membranes. Given this, we also discuss the challenges that we should unravel in the foreseeable future. Numerous features such as the actin-cytoskeleton network, the glycocalyx network, and nonequilibrium transport under ATP-driven conditions have so far received very little attention; however, the potential of simulations to solve them would be exceptionally high. A major milestone for this research would be that one day we could say that computer simulations genuinely research biological membranes, not just lipid bilayers. American Chemical Society 2019-03-12 2019-05-08 /pmc/articles/PMC6727218/ /pubmed/30859819 http://dx.doi.org/10.1021/acs.chemrev.8b00538 Text en Copyright © 2019 American Chemical Society This is an open access article published under a Creative Commons Attribution (CC-BY) License (http://pubs.acs.org/page/policy/authorchoice_ccby_termsofuse.html) , which permits unrestricted use, distribution and reproduction in any medium, provided the author and source are cited. |
spellingShingle | Enkavi, Giray Javanainen, Matti Kulig, Waldemar Róg, Tomasz Vattulainen, Ilpo Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance |
title | Multiscale Simulations of Biological Membranes: The
Challenge To Understand Biological Phenomena in a Living Substance |
title_full | Multiscale Simulations of Biological Membranes: The
Challenge To Understand Biological Phenomena in a Living Substance |
title_fullStr | Multiscale Simulations of Biological Membranes: The
Challenge To Understand Biological Phenomena in a Living Substance |
title_full_unstemmed | Multiscale Simulations of Biological Membranes: The
Challenge To Understand Biological Phenomena in a Living Substance |
title_short | Multiscale Simulations of Biological Membranes: The
Challenge To Understand Biological Phenomena in a Living Substance |
title_sort | multiscale simulations of biological membranes: the
challenge to understand biological phenomena in a living substance |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6727218/ https://www.ncbi.nlm.nih.gov/pubmed/30859819 http://dx.doi.org/10.1021/acs.chemrev.8b00538 |
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