Cargando…

Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance

[Image: see text] Biological membranes are tricky to investigate. They are complex in terms of molecular composition and structure, functional over a wide range of time scales, and characterized by nonequilibrium conditions. Because of all of these features, simulations are a great technique to stud...

Descripción completa

Detalles Bibliográficos
Autores principales: Enkavi, Giray, Javanainen, Matti, Kulig, Waldemar, Róg, Tomasz, Vattulainen, Ilpo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2019
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6727218/
https://www.ncbi.nlm.nih.gov/pubmed/30859819
http://dx.doi.org/10.1021/acs.chemrev.8b00538
_version_ 1783449216341770240
author Enkavi, Giray
Javanainen, Matti
Kulig, Waldemar
Róg, Tomasz
Vattulainen, Ilpo
author_facet Enkavi, Giray
Javanainen, Matti
Kulig, Waldemar
Róg, Tomasz
Vattulainen, Ilpo
author_sort Enkavi, Giray
collection PubMed
description [Image: see text] Biological membranes are tricky to investigate. They are complex in terms of molecular composition and structure, functional over a wide range of time scales, and characterized by nonequilibrium conditions. Because of all of these features, simulations are a great technique to study biomembrane behavior. A significant part of the functional processes in biological membranes takes place at the molecular level; thus computer simulations are the method of choice to explore how their properties emerge from specific molecular features and how the interplay among the numerous molecules gives rise to function over spatial and time scales larger than the molecular ones. In this review, we focus on this broad theme. We discuss the current state-of-the-art of biomembrane simulations that, until now, have largely focused on a rather narrow picture of the complexity of the membranes. Given this, we also discuss the challenges that we should unravel in the foreseeable future. Numerous features such as the actin-cytoskeleton network, the glycocalyx network, and nonequilibrium transport under ATP-driven conditions have so far received very little attention; however, the potential of simulations to solve them would be exceptionally high. A major milestone for this research would be that one day we could say that computer simulations genuinely research biological membranes, not just lipid bilayers.
format Online
Article
Text
id pubmed-6727218
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher American Chemical Society
record_format MEDLINE/PubMed
spelling pubmed-67272182019-09-06 Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance Enkavi, Giray Javanainen, Matti Kulig, Waldemar Róg, Tomasz Vattulainen, Ilpo Chem Rev [Image: see text] Biological membranes are tricky to investigate. They are complex in terms of molecular composition and structure, functional over a wide range of time scales, and characterized by nonequilibrium conditions. Because of all of these features, simulations are a great technique to study biomembrane behavior. A significant part of the functional processes in biological membranes takes place at the molecular level; thus computer simulations are the method of choice to explore how their properties emerge from specific molecular features and how the interplay among the numerous molecules gives rise to function over spatial and time scales larger than the molecular ones. In this review, we focus on this broad theme. We discuss the current state-of-the-art of biomembrane simulations that, until now, have largely focused on a rather narrow picture of the complexity of the membranes. Given this, we also discuss the challenges that we should unravel in the foreseeable future. Numerous features such as the actin-cytoskeleton network, the glycocalyx network, and nonequilibrium transport under ATP-driven conditions have so far received very little attention; however, the potential of simulations to solve them would be exceptionally high. A major milestone for this research would be that one day we could say that computer simulations genuinely research biological membranes, not just lipid bilayers. American Chemical Society 2019-03-12 2019-05-08 /pmc/articles/PMC6727218/ /pubmed/30859819 http://dx.doi.org/10.1021/acs.chemrev.8b00538 Text en Copyright © 2019 American Chemical Society This is an open access article published under a Creative Commons Attribution (CC-BY) License (http://pubs.acs.org/page/policy/authorchoice_ccby_termsofuse.html) , which permits unrestricted use, distribution and reproduction in any medium, provided the author and source are cited.
spellingShingle Enkavi, Giray
Javanainen, Matti
Kulig, Waldemar
Róg, Tomasz
Vattulainen, Ilpo
Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance
title Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance
title_full Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance
title_fullStr Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance
title_full_unstemmed Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance
title_short Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance
title_sort multiscale simulations of biological membranes: the challenge to understand biological phenomena in a living substance
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6727218/
https://www.ncbi.nlm.nih.gov/pubmed/30859819
http://dx.doi.org/10.1021/acs.chemrev.8b00538
work_keys_str_mv AT enkavigiray multiscalesimulationsofbiologicalmembranesthechallengetounderstandbiologicalphenomenainalivingsubstance
AT javanainenmatti multiscalesimulationsofbiologicalmembranesthechallengetounderstandbiologicalphenomenainalivingsubstance
AT kuligwaldemar multiscalesimulationsofbiologicalmembranesthechallengetounderstandbiologicalphenomenainalivingsubstance
AT rogtomasz multiscalesimulationsofbiologicalmembranesthechallengetounderstandbiologicalphenomenainalivingsubstance
AT vattulainenilpo multiscalesimulationsofbiologicalmembranesthechallengetounderstandbiologicalphenomenainalivingsubstance