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Development of a rule-based automatic five-sleep-stage scoring method for rats
BACKGROUND: Sleep problem or disturbance often exists in pain or neurological/psychiatric diseases. However, sleep scoring is a time-consuming tedious labor. Very few studies discuss the 5-stage (wake/NREM1/NREM2/transition sleep/REM) automatic fine analysis of wake–sleep stages in rodent models. Th...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6727553/ https://www.ncbi.nlm.nih.gov/pubmed/31484584 http://dx.doi.org/10.1186/s12938-019-0712-8 |
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author | Wei, Ting-Ying Young, Chung-Ping Liu, Yu-Ting Xu, Jia-Hao Liang, Sheng-Fu Shaw, Fu-Zen Kuo, Chin-En |
author_facet | Wei, Ting-Ying Young, Chung-Ping Liu, Yu-Ting Xu, Jia-Hao Liang, Sheng-Fu Shaw, Fu-Zen Kuo, Chin-En |
author_sort | Wei, Ting-Ying |
collection | PubMed |
description | BACKGROUND: Sleep problem or disturbance often exists in pain or neurological/psychiatric diseases. However, sleep scoring is a time-consuming tedious labor. Very few studies discuss the 5-stage (wake/NREM1/NREM2/transition sleep/REM) automatic fine analysis of wake–sleep stages in rodent models. The present study aimed to develop and validate an automatic rule-based classification of 5-stage wake–sleep pattern in acid-induced widespread hyperalgesia model of the rat. RESULTS: The overall agreement between two experts’ consensus and automatic scoring in the 5-stage and 3-stage analyses were 92.32% (κ = 0.88) and 94.97% (κ = 0.91), respectively. Standard deviation of the accuracy among all rats was only 2.93%. Both frontal–occipital EEG and parietal EEG data showed comparable accuracies. The results demonstrated the performance of the proposed method with high accuracy and reliability. Subtle changes exhibited in the 5-stage wake–sleep analysis but not in the 3-stage analysis during hyperalgesia development of the acid-induced pain model. Compared with existing methods, our method can automatically classify vigilance states into 5-stage or 3-stage wake–sleep pattern with a promising high agreement with sleep experts. CONCLUSIONS: In this study, we have performed and validated a reliable automated sleep scoring system in rats. The classification algorithm is less computation power, a high robustness, and consistency of results. The algorithm can be implanted into a versatile wireless portable monitoring system for real-time analysis in the future. |
format | Online Article Text |
id | pubmed-6727553 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-67275532019-09-12 Development of a rule-based automatic five-sleep-stage scoring method for rats Wei, Ting-Ying Young, Chung-Ping Liu, Yu-Ting Xu, Jia-Hao Liang, Sheng-Fu Shaw, Fu-Zen Kuo, Chin-En Biomed Eng Online Research BACKGROUND: Sleep problem or disturbance often exists in pain or neurological/psychiatric diseases. However, sleep scoring is a time-consuming tedious labor. Very few studies discuss the 5-stage (wake/NREM1/NREM2/transition sleep/REM) automatic fine analysis of wake–sleep stages in rodent models. The present study aimed to develop and validate an automatic rule-based classification of 5-stage wake–sleep pattern in acid-induced widespread hyperalgesia model of the rat. RESULTS: The overall agreement between two experts’ consensus and automatic scoring in the 5-stage and 3-stage analyses were 92.32% (κ = 0.88) and 94.97% (κ = 0.91), respectively. Standard deviation of the accuracy among all rats was only 2.93%. Both frontal–occipital EEG and parietal EEG data showed comparable accuracies. The results demonstrated the performance of the proposed method with high accuracy and reliability. Subtle changes exhibited in the 5-stage wake–sleep analysis but not in the 3-stage analysis during hyperalgesia development of the acid-induced pain model. Compared with existing methods, our method can automatically classify vigilance states into 5-stage or 3-stage wake–sleep pattern with a promising high agreement with sleep experts. CONCLUSIONS: In this study, we have performed and validated a reliable automated sleep scoring system in rats. The classification algorithm is less computation power, a high robustness, and consistency of results. The algorithm can be implanted into a versatile wireless portable monitoring system for real-time analysis in the future. BioMed Central 2019-09-04 /pmc/articles/PMC6727553/ /pubmed/31484584 http://dx.doi.org/10.1186/s12938-019-0712-8 Text en © The Author(s) 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Wei, Ting-Ying Young, Chung-Ping Liu, Yu-Ting Xu, Jia-Hao Liang, Sheng-Fu Shaw, Fu-Zen Kuo, Chin-En Development of a rule-based automatic five-sleep-stage scoring method for rats |
title | Development of a rule-based automatic five-sleep-stage scoring method for rats |
title_full | Development of a rule-based automatic five-sleep-stage scoring method for rats |
title_fullStr | Development of a rule-based automatic five-sleep-stage scoring method for rats |
title_full_unstemmed | Development of a rule-based automatic five-sleep-stage scoring method for rats |
title_short | Development of a rule-based automatic five-sleep-stage scoring method for rats |
title_sort | development of a rule-based automatic five-sleep-stage scoring method for rats |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6727553/ https://www.ncbi.nlm.nih.gov/pubmed/31484584 http://dx.doi.org/10.1186/s12938-019-0712-8 |
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