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Bootstrap Embedding for Molecules
[Image: see text] Fragment embedding is one way to circumvent the high computational scaling of accurate electron correlation methods. The challenge of applying fragment embedding to molecular systems primarily lies in the strong entanglement and correlation that prevent accurate fragmentation acros...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American
Chemical Society
2019
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6727622/ https://www.ncbi.nlm.nih.gov/pubmed/31343878 http://dx.doi.org/10.1021/acs.jctc.9b00529 |
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author | Ye, Hong-Zhou Ricke, Nathan D. Tran, Henry K. Van Voorhis, Troy |
author_facet | Ye, Hong-Zhou Ricke, Nathan D. Tran, Henry K. Van Voorhis, Troy |
author_sort | Ye, Hong-Zhou |
collection | PubMed |
description | [Image: see text] Fragment embedding is one way to circumvent the high computational scaling of accurate electron correlation methods. The challenge of applying fragment embedding to molecular systems primarily lies in the strong entanglement and correlation that prevent accurate fragmentation across chemical bonds. Recently, Schmidt decomposition has been shown effective for embedding fragments that are strongly coupled to a bath in several model systems. In this work, we extend a recently developed quantum embedding scheme, bootstrap embedding (BE), to molecular systems. The resulting method utilizes the matching conditions naturally arising from using overlapping fragments to optimize the embedding. Numerical simulation suggests that the accuracy of the embedding improves rapidly with fragment size for small molecules, whereas larger fragments that include orbitals from different atoms may be needed for larger molecules. BE scales linearly with system size (apart from an integral transform) and hence can potentially be useful for large-scale calculations. |
format | Online Article Text |
id | pubmed-6727622 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | American
Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-67276222019-09-06 Bootstrap Embedding for Molecules Ye, Hong-Zhou Ricke, Nathan D. Tran, Henry K. Van Voorhis, Troy J Chem Theory Comput [Image: see text] Fragment embedding is one way to circumvent the high computational scaling of accurate electron correlation methods. The challenge of applying fragment embedding to molecular systems primarily lies in the strong entanglement and correlation that prevent accurate fragmentation across chemical bonds. Recently, Schmidt decomposition has been shown effective for embedding fragments that are strongly coupled to a bath in several model systems. In this work, we extend a recently developed quantum embedding scheme, bootstrap embedding (BE), to molecular systems. The resulting method utilizes the matching conditions naturally arising from using overlapping fragments to optimize the embedding. Numerical simulation suggests that the accuracy of the embedding improves rapidly with fragment size for small molecules, whereas larger fragments that include orbitals from different atoms may be needed for larger molecules. BE scales linearly with system size (apart from an integral transform) and hence can potentially be useful for large-scale calculations. American Chemical Society 2019-07-25 2019-08-13 /pmc/articles/PMC6727622/ /pubmed/31343878 http://dx.doi.org/10.1021/acs.jctc.9b00529 Text en Copyright © 2019 American Chemical Society This is an open access article published under a Creative Commons Non-Commercial No Derivative Works (CC-BY-NC-ND) Attribution License (http://pubs.acs.org/page/policy/authorchoice_ccbyncnd_termsofuse.html) , which permits copying and redistribution of the article, and creation of adaptations, all for non-commercial purposes. |
spellingShingle | Ye, Hong-Zhou Ricke, Nathan D. Tran, Henry K. Van Voorhis, Troy Bootstrap Embedding for Molecules |
title | Bootstrap Embedding for Molecules |
title_full | Bootstrap Embedding for Molecules |
title_fullStr | Bootstrap Embedding for Molecules |
title_full_unstemmed | Bootstrap Embedding for Molecules |
title_short | Bootstrap Embedding for Molecules |
title_sort | bootstrap embedding for molecules |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6727622/ https://www.ncbi.nlm.nih.gov/pubmed/31343878 http://dx.doi.org/10.1021/acs.jctc.9b00529 |
work_keys_str_mv | AT yehongzhou bootstrapembeddingformolecules AT rickenathand bootstrapembeddingformolecules AT tranhenryk bootstrapembeddingformolecules AT vanvoorhistroy bootstrapembeddingformolecules |