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GSTM1 Copy Number Is Not Associated With Risk of Kidney Failure in a Large Cohort

Deletion of glutathione S-transferase µ1 (GSTM1) is common in populations and has been asserted to associate with chronic kidney disease progression in some research studies. The association needs to be validated. We estimated GSTM1 copy number using whole exome sequencing data in the DiscovEHR coho...

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Autores principales: Zhang, Yanfei, Zafar, Waleed, Hartzel, Dustin N., Williams, Marc S., Tin, Adrienne, Chang, Alex R., Lee, Ming Ta Michael
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6728412/
https://www.ncbi.nlm.nih.gov/pubmed/31555322
http://dx.doi.org/10.3389/fgene.2019.00765
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author Zhang, Yanfei
Zafar, Waleed
Hartzel, Dustin N.
Williams, Marc S.
Tin, Adrienne
Chang, Alex R.
Lee, Ming Ta Michael
author_facet Zhang, Yanfei
Zafar, Waleed
Hartzel, Dustin N.
Williams, Marc S.
Tin, Adrienne
Chang, Alex R.
Lee, Ming Ta Michael
author_sort Zhang, Yanfei
collection PubMed
description Deletion of glutathione S-transferase µ1 (GSTM1) is common in populations and has been asserted to associate with chronic kidney disease progression in some research studies. The association needs to be validated. We estimated GSTM1 copy number using whole exome sequencing data in the DiscovEHR cohort. Kidney failure was defined as requiring dialysis or receiving kidney transplant using data from the electronic health record and linkage to the United States Renal Data System, or the most recent eGFR < 15 ml/min/1.73 m(2). In a cohort of 46,983 unrelated participants, 28.8% of blacks and 52.1% of whites had 0 copies of GSTM1. Over a mean of 9.2 years follow-up, 645 kidney failure events were observed in 46,187 white participants, and 28 in 796 black participants. No significant association was observed between GSTM1 copy number and kidney failure in Cox regression adjusting for age, sex, BMI, smoking status, genetic principal components, or comorbid conditions (hypertension, diabetes, heart failure, coronary artery disease, and stroke), whether using a genotypic, dominant, or recessive model. In sensitivity analyses, GSTM1 copy number was not associated with kidney failure in participants that were 45 years or older at baseline, had baseline eGFR < 60 ml/min/1.73 m(2), or with baseline year between 1996 and 2002. In conclusion, we found no association between GSTM1 copy number and kidney failure in a large cohort study.
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spelling pubmed-67284122019-09-25 GSTM1 Copy Number Is Not Associated With Risk of Kidney Failure in a Large Cohort Zhang, Yanfei Zafar, Waleed Hartzel, Dustin N. Williams, Marc S. Tin, Adrienne Chang, Alex R. Lee, Ming Ta Michael Front Genet Genetics Deletion of glutathione S-transferase µ1 (GSTM1) is common in populations and has been asserted to associate with chronic kidney disease progression in some research studies. The association needs to be validated. We estimated GSTM1 copy number using whole exome sequencing data in the DiscovEHR cohort. Kidney failure was defined as requiring dialysis or receiving kidney transplant using data from the electronic health record and linkage to the United States Renal Data System, or the most recent eGFR < 15 ml/min/1.73 m(2). In a cohort of 46,983 unrelated participants, 28.8% of blacks and 52.1% of whites had 0 copies of GSTM1. Over a mean of 9.2 years follow-up, 645 kidney failure events were observed in 46,187 white participants, and 28 in 796 black participants. No significant association was observed between GSTM1 copy number and kidney failure in Cox regression adjusting for age, sex, BMI, smoking status, genetic principal components, or comorbid conditions (hypertension, diabetes, heart failure, coronary artery disease, and stroke), whether using a genotypic, dominant, or recessive model. In sensitivity analyses, GSTM1 copy number was not associated with kidney failure in participants that were 45 years or older at baseline, had baseline eGFR < 60 ml/min/1.73 m(2), or with baseline year between 1996 and 2002. In conclusion, we found no association between GSTM1 copy number and kidney failure in a large cohort study. Frontiers Media S.A. 2019-08-30 /pmc/articles/PMC6728412/ /pubmed/31555322 http://dx.doi.org/10.3389/fgene.2019.00765 Text en Copyright © 2019 Zhang, Zafar, Hartzel, Williams, Tin, Chang and Lee http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Zhang, Yanfei
Zafar, Waleed
Hartzel, Dustin N.
Williams, Marc S.
Tin, Adrienne
Chang, Alex R.
Lee, Ming Ta Michael
GSTM1 Copy Number Is Not Associated With Risk of Kidney Failure in a Large Cohort
title GSTM1 Copy Number Is Not Associated With Risk of Kidney Failure in a Large Cohort
title_full GSTM1 Copy Number Is Not Associated With Risk of Kidney Failure in a Large Cohort
title_fullStr GSTM1 Copy Number Is Not Associated With Risk of Kidney Failure in a Large Cohort
title_full_unstemmed GSTM1 Copy Number Is Not Associated With Risk of Kidney Failure in a Large Cohort
title_short GSTM1 Copy Number Is Not Associated With Risk of Kidney Failure in a Large Cohort
title_sort gstm1 copy number is not associated with risk of kidney failure in a large cohort
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6728412/
https://www.ncbi.nlm.nih.gov/pubmed/31555322
http://dx.doi.org/10.3389/fgene.2019.00765
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