Cargando…

A framework for meta-analysis of prediction model studies with binary and time-to-event outcomes

It is widely recommended that any developed—diagnostic or prognostic—prediction model is externally validated in terms of its predictive performance measured by calibration and discrimination. When multiple validations have been performed, a systematic review followed by a formal meta-analysis helps...

Descripción completa

Detalles Bibliográficos
Autores principales: Debray, Thomas PA, Damen, Johanna AAG, Riley, Richard D, Snell, Kym, Reitsma, Johannes B, Hooft, Lotty, Collins, Gary S, Moons, Karel GM
Formato: Online Artículo Texto
Lenguaje:English
Publicado: SAGE Publications 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6728752/
https://www.ncbi.nlm.nih.gov/pubmed/30032705
http://dx.doi.org/10.1177/0962280218785504
_version_ 1783449473744109568
author Debray, Thomas PA
Damen, Johanna AAG
Riley, Richard D
Snell, Kym
Reitsma, Johannes B
Hooft, Lotty
Collins, Gary S
Moons, Karel GM
author_facet Debray, Thomas PA
Damen, Johanna AAG
Riley, Richard D
Snell, Kym
Reitsma, Johannes B
Hooft, Lotty
Collins, Gary S
Moons, Karel GM
author_sort Debray, Thomas PA
collection PubMed
description It is widely recommended that any developed—diagnostic or prognostic—prediction model is externally validated in terms of its predictive performance measured by calibration and discrimination. When multiple validations have been performed, a systematic review followed by a formal meta-analysis helps to summarize overall performance across multiple settings, and reveals under which circumstances the model performs suboptimal (alternative poorer) and may need adjustment. We discuss how to undertake meta-analysis of the performance of prediction models with either a binary or a time-to-event outcome. We address how to deal with incomplete availability of study-specific results (performance estimates and their precision), and how to produce summary estimates of the c-statistic, the observed:expected ratio and the calibration slope. Furthermore, we discuss the implementation of frequentist and Bayesian meta-analysis methods, and propose novel empirically-based prior distributions to improve estimation of between-study heterogeneity in small samples. Finally, we illustrate all methods using two examples: meta-analysis of the predictive performance of EuroSCORE II and of the Framingham Risk Score. All examples and meta-analysis models have been implemented in our newly developed R package “metamisc”.
format Online
Article
Text
id pubmed-6728752
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher SAGE Publications
record_format MEDLINE/PubMed
spelling pubmed-67287522019-10-03 A framework for meta-analysis of prediction model studies with binary and time-to-event outcomes Debray, Thomas PA Damen, Johanna AAG Riley, Richard D Snell, Kym Reitsma, Johannes B Hooft, Lotty Collins, Gary S Moons, Karel GM Stat Methods Med Res Regular Articles It is widely recommended that any developed—diagnostic or prognostic—prediction model is externally validated in terms of its predictive performance measured by calibration and discrimination. When multiple validations have been performed, a systematic review followed by a formal meta-analysis helps to summarize overall performance across multiple settings, and reveals under which circumstances the model performs suboptimal (alternative poorer) and may need adjustment. We discuss how to undertake meta-analysis of the performance of prediction models with either a binary or a time-to-event outcome. We address how to deal with incomplete availability of study-specific results (performance estimates and their precision), and how to produce summary estimates of the c-statistic, the observed:expected ratio and the calibration slope. Furthermore, we discuss the implementation of frequentist and Bayesian meta-analysis methods, and propose novel empirically-based prior distributions to improve estimation of between-study heterogeneity in small samples. Finally, we illustrate all methods using two examples: meta-analysis of the predictive performance of EuroSCORE II and of the Framingham Risk Score. All examples and meta-analysis models have been implemented in our newly developed R package “metamisc”. SAGE Publications 2018-07-23 2019-09 /pmc/articles/PMC6728752/ /pubmed/30032705 http://dx.doi.org/10.1177/0962280218785504 Text en © The Author(s) 2018 http://creativecommons.org/licenses/by-nc/4.0/ This article is distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 License (http://www.creativecommons.org/licenses/by-nc/4.0/) which permits non-commercial use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access pages (https://us.sagepub.com/en-us/nam/open-access-at-sage).
spellingShingle Regular Articles
Debray, Thomas PA
Damen, Johanna AAG
Riley, Richard D
Snell, Kym
Reitsma, Johannes B
Hooft, Lotty
Collins, Gary S
Moons, Karel GM
A framework for meta-analysis of prediction model studies with binary and time-to-event outcomes
title A framework for meta-analysis of prediction model studies with binary and time-to-event outcomes
title_full A framework for meta-analysis of prediction model studies with binary and time-to-event outcomes
title_fullStr A framework for meta-analysis of prediction model studies with binary and time-to-event outcomes
title_full_unstemmed A framework for meta-analysis of prediction model studies with binary and time-to-event outcomes
title_short A framework for meta-analysis of prediction model studies with binary and time-to-event outcomes
title_sort framework for meta-analysis of prediction model studies with binary and time-to-event outcomes
topic Regular Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6728752/
https://www.ncbi.nlm.nih.gov/pubmed/30032705
http://dx.doi.org/10.1177/0962280218785504
work_keys_str_mv AT debraythomaspa aframeworkformetaanalysisofpredictionmodelstudieswithbinaryandtimetoeventoutcomes
AT damenjohannaaag aframeworkformetaanalysisofpredictionmodelstudieswithbinaryandtimetoeventoutcomes
AT rileyrichardd aframeworkformetaanalysisofpredictionmodelstudieswithbinaryandtimetoeventoutcomes
AT snellkym aframeworkformetaanalysisofpredictionmodelstudieswithbinaryandtimetoeventoutcomes
AT reitsmajohannesb aframeworkformetaanalysisofpredictionmodelstudieswithbinaryandtimetoeventoutcomes
AT hooftlotty aframeworkformetaanalysisofpredictionmodelstudieswithbinaryandtimetoeventoutcomes
AT collinsgarys aframeworkformetaanalysisofpredictionmodelstudieswithbinaryandtimetoeventoutcomes
AT moonskarelgm aframeworkformetaanalysisofpredictionmodelstudieswithbinaryandtimetoeventoutcomes
AT debraythomaspa frameworkformetaanalysisofpredictionmodelstudieswithbinaryandtimetoeventoutcomes
AT damenjohannaaag frameworkformetaanalysisofpredictionmodelstudieswithbinaryandtimetoeventoutcomes
AT rileyrichardd frameworkformetaanalysisofpredictionmodelstudieswithbinaryandtimetoeventoutcomes
AT snellkym frameworkformetaanalysisofpredictionmodelstudieswithbinaryandtimetoeventoutcomes
AT reitsmajohannesb frameworkformetaanalysisofpredictionmodelstudieswithbinaryandtimetoeventoutcomes
AT hooftlotty frameworkformetaanalysisofpredictionmodelstudieswithbinaryandtimetoeventoutcomes
AT collinsgarys frameworkformetaanalysisofpredictionmodelstudieswithbinaryandtimetoeventoutcomes
AT moonskarelgm frameworkformetaanalysisofpredictionmodelstudieswithbinaryandtimetoeventoutcomes