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Deuteros: software for rapid analysis and visualization of data from differential hydrogen deuterium exchange-mass spectrometry

SUMMARY: Hydrogen deuterium exchange-mass spectrometry (HDX-MS) has emerged as a powerful technique for interrogating the conformational dynamics of proteins and their complexes. Currently, analysis of HDX-MS data remains a laborious procedure, mainly due to the lack of streamlined software to proce...

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Detalles Bibliográficos
Autores principales: Lau, Andy M C, Ahdash, Zainab, Martens, Chloe, Politis, Argyris
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6736138/
https://www.ncbi.nlm.nih.gov/pubmed/30649183
http://dx.doi.org/10.1093/bioinformatics/btz022
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author Lau, Andy M C
Ahdash, Zainab
Martens, Chloe
Politis, Argyris
author_facet Lau, Andy M C
Ahdash, Zainab
Martens, Chloe
Politis, Argyris
author_sort Lau, Andy M C
collection PubMed
description SUMMARY: Hydrogen deuterium exchange-mass spectrometry (HDX-MS) has emerged as a powerful technique for interrogating the conformational dynamics of proteins and their complexes. Currently, analysis of HDX-MS data remains a laborious procedure, mainly due to the lack of streamlined software to process the large datasets. We present Deuteros which is a standalone software designed to be coupled with Waters DynamX HDX data analysis software, allowing the rapid analysis and visualization of data from differential HDX-MS. AVAILABILITY AND IMPLEMENTATION: Deuteros is open-source and can be downloaded from https://github.com/andymlau/Deuteros, under the Apache 2.0 license. Written in MATLAB and supported on both Windows and MacOS. Requires the MATLAB runtime library. According to the Wellcome Trust and UK research councils' Common Principles on Data Policy on data, software and materials management and sharing, all data supporting this study will be openly available from the software repository.
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spelling pubmed-67361382019-09-16 Deuteros: software for rapid analysis and visualization of data from differential hydrogen deuterium exchange-mass spectrometry Lau, Andy M C Ahdash, Zainab Martens, Chloe Politis, Argyris Bioinformatics Applications Notes SUMMARY: Hydrogen deuterium exchange-mass spectrometry (HDX-MS) has emerged as a powerful technique for interrogating the conformational dynamics of proteins and their complexes. Currently, analysis of HDX-MS data remains a laborious procedure, mainly due to the lack of streamlined software to process the large datasets. We present Deuteros which is a standalone software designed to be coupled with Waters DynamX HDX data analysis software, allowing the rapid analysis and visualization of data from differential HDX-MS. AVAILABILITY AND IMPLEMENTATION: Deuteros is open-source and can be downloaded from https://github.com/andymlau/Deuteros, under the Apache 2.0 license. Written in MATLAB and supported on both Windows and MacOS. Requires the MATLAB runtime library. According to the Wellcome Trust and UK research councils' Common Principles on Data Policy on data, software and materials management and sharing, all data supporting this study will be openly available from the software repository. Oxford University Press 2019-09-01 2019-01-14 /pmc/articles/PMC6736138/ /pubmed/30649183 http://dx.doi.org/10.1093/bioinformatics/btz022 Text en © The Author(s) 2019. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Notes
Lau, Andy M C
Ahdash, Zainab
Martens, Chloe
Politis, Argyris
Deuteros: software for rapid analysis and visualization of data from differential hydrogen deuterium exchange-mass spectrometry
title Deuteros: software for rapid analysis and visualization of data from differential hydrogen deuterium exchange-mass spectrometry
title_full Deuteros: software for rapid analysis and visualization of data from differential hydrogen deuterium exchange-mass spectrometry
title_fullStr Deuteros: software for rapid analysis and visualization of data from differential hydrogen deuterium exchange-mass spectrometry
title_full_unstemmed Deuteros: software for rapid analysis and visualization of data from differential hydrogen deuterium exchange-mass spectrometry
title_short Deuteros: software for rapid analysis and visualization of data from differential hydrogen deuterium exchange-mass spectrometry
title_sort deuteros: software for rapid analysis and visualization of data from differential hydrogen deuterium exchange-mass spectrometry
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6736138/
https://www.ncbi.nlm.nih.gov/pubmed/30649183
http://dx.doi.org/10.1093/bioinformatics/btz022
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