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Deuteros: software for rapid analysis and visualization of data from differential hydrogen deuterium exchange-mass spectrometry
SUMMARY: Hydrogen deuterium exchange-mass spectrometry (HDX-MS) has emerged as a powerful technique for interrogating the conformational dynamics of proteins and their complexes. Currently, analysis of HDX-MS data remains a laborious procedure, mainly due to the lack of streamlined software to proce...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6736138/ https://www.ncbi.nlm.nih.gov/pubmed/30649183 http://dx.doi.org/10.1093/bioinformatics/btz022 |
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author | Lau, Andy M C Ahdash, Zainab Martens, Chloe Politis, Argyris |
author_facet | Lau, Andy M C Ahdash, Zainab Martens, Chloe Politis, Argyris |
author_sort | Lau, Andy M C |
collection | PubMed |
description | SUMMARY: Hydrogen deuterium exchange-mass spectrometry (HDX-MS) has emerged as a powerful technique for interrogating the conformational dynamics of proteins and their complexes. Currently, analysis of HDX-MS data remains a laborious procedure, mainly due to the lack of streamlined software to process the large datasets. We present Deuteros which is a standalone software designed to be coupled with Waters DynamX HDX data analysis software, allowing the rapid analysis and visualization of data from differential HDX-MS. AVAILABILITY AND IMPLEMENTATION: Deuteros is open-source and can be downloaded from https://github.com/andymlau/Deuteros, under the Apache 2.0 license. Written in MATLAB and supported on both Windows and MacOS. Requires the MATLAB runtime library. According to the Wellcome Trust and UK research councils' Common Principles on Data Policy on data, software and materials management and sharing, all data supporting this study will be openly available from the software repository. |
format | Online Article Text |
id | pubmed-6736138 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-67361382019-09-16 Deuteros: software for rapid analysis and visualization of data from differential hydrogen deuterium exchange-mass spectrometry Lau, Andy M C Ahdash, Zainab Martens, Chloe Politis, Argyris Bioinformatics Applications Notes SUMMARY: Hydrogen deuterium exchange-mass spectrometry (HDX-MS) has emerged as a powerful technique for interrogating the conformational dynamics of proteins and their complexes. Currently, analysis of HDX-MS data remains a laborious procedure, mainly due to the lack of streamlined software to process the large datasets. We present Deuteros which is a standalone software designed to be coupled with Waters DynamX HDX data analysis software, allowing the rapid analysis and visualization of data from differential HDX-MS. AVAILABILITY AND IMPLEMENTATION: Deuteros is open-source and can be downloaded from https://github.com/andymlau/Deuteros, under the Apache 2.0 license. Written in MATLAB and supported on both Windows and MacOS. Requires the MATLAB runtime library. According to the Wellcome Trust and UK research councils' Common Principles on Data Policy on data, software and materials management and sharing, all data supporting this study will be openly available from the software repository. Oxford University Press 2019-09-01 2019-01-14 /pmc/articles/PMC6736138/ /pubmed/30649183 http://dx.doi.org/10.1093/bioinformatics/btz022 Text en © The Author(s) 2019. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Applications Notes Lau, Andy M C Ahdash, Zainab Martens, Chloe Politis, Argyris Deuteros: software for rapid analysis and visualization of data from differential hydrogen deuterium exchange-mass spectrometry |
title | Deuteros: software for rapid analysis and visualization of data from differential hydrogen deuterium exchange-mass spectrometry |
title_full | Deuteros: software for rapid analysis and visualization of data from differential hydrogen deuterium exchange-mass spectrometry |
title_fullStr | Deuteros: software for rapid analysis and visualization of data from differential hydrogen deuterium exchange-mass spectrometry |
title_full_unstemmed | Deuteros: software for rapid analysis and visualization of data from differential hydrogen deuterium exchange-mass spectrometry |
title_short | Deuteros: software for rapid analysis and visualization of data from differential hydrogen deuterium exchange-mass spectrometry |
title_sort | deuteros: software for rapid analysis and visualization of data from differential hydrogen deuterium exchange-mass spectrometry |
topic | Applications Notes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6736138/ https://www.ncbi.nlm.nih.gov/pubmed/30649183 http://dx.doi.org/10.1093/bioinformatics/btz022 |
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