Cargando…

Deuteros: software for rapid analysis and visualization of data from differential hydrogen deuterium exchange-mass spectrometry

SUMMARY: Hydrogen deuterium exchange-mass spectrometry (HDX-MS) has emerged as a powerful technique for interrogating the conformational dynamics of proteins and their complexes. Currently, analysis of HDX-MS data remains a laborious procedure, mainly due to the lack of streamlined software to proce...

Descripción completa

Detalles Bibliográficos
Autores principales:	Lau, Andy M C, Ahdash, Zainab, Martens, Chloe, Politis, Argyris
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2019
Materias:	Applications Notes
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6736138/ https://www.ncbi.nlm.nih.gov/pubmed/30649183 http://dx.doi.org/10.1093/bioinformatics/btz022

Ejemplares similares

Deuteros 2.0: peptide-level significance testing of data from hydrogen deuterium exchange mass spectrometry
por: Lau, Andy M, et al.
Publicado: (2021)

A glimpse into the molecular mechanism of integral membrane proteins through hydrogen–deuterium exchange mass spectrometry
por: Martens, Chloe, et al.
Publicado: (2020)

Analyzing Protein Architectures and Protein-Ligand Complexes by Integrative Structural Mass Spectrometry
por: Ahdash, Zainab, et al.
Publicado: (2018)

HDX-Viewer: interactive 3D visualization of hydrogen–deuterium exchange data
por: Bouyssié, David, et al.
Publicado: (2019)

Hydrogen-deuterium exchange mass spectrometry captures distinct dynamics upon substrate and inhibitor binding to a transporter
por: Jia, Ruyu, et al.
Publicado: (2020)

HaDeX: an R package and web-server for analysis of data from hydrogen–deuterium exchange mass spectrometry experiments
por: Puchała, Weronika, et al.
Publicado: (2020)

Hydrogen/deuterium exchange-mass spectrometry of integral membrane proteins in native-like environments: current scenario and the way forward
por: Javed, Waqas, et al.
Publicado: (2023)

Integrating Hydrogen Deuterium Exchange–Mass Spectrometry with Molecular Simulations Enables Quantification of the Conformational Populations of the Sugar Transporter XylE
por: Jia, Ruyu, et al.
Publicado: (2023)

HDfleX: Software for Flexible High Structural Resolution of Hydrogen/Deuterium-Exchange Mass Spectrometry Data
por: Seetaloo, Neeleema, et al.
Publicado: (2022)

Development of Software for the In-Depth Analysis of Protein Dynamics as Determined by MALDI Mass Spectrometry-Based Hydrogen/Deuterium Exchange
por: Yamamoto, Tatsuya, et al.
Publicado: (2019)

SVA: software for annotating and visualizing sequenced human genomes
por: Ge, Dongliang, et al.
Publicado: (2011)

Empirical Bayes functional models for hydrogen deuterium exchange mass spectrometry
por: Crook, Oliver M., et al.
Publicado: (2022)

A Functional Bayesian Model for Hydrogen–Deuterium Exchange Mass Spectrometry
por: Crook, Oliver M., et al.
Publicado: (2023)

SnoopCGH: software for visualizing comparative genomic hybridization data
por: Almagro-Garcia, Jacob, et al.
Publicado: (2009)

OMTools: a software package for visualizing and processing optical mapping data
por: Leung, Alden King-Yung, et al.
Publicado: (2017)

ggCyto: next generation open-source visualization software for cytometry
por: Van, Phu, et al.
Publicado: (2018)

ComMap: a software to perform large-scale structure-based mapping for cross-linking mass spectrometry
por: Zhang, Weijie, et al.
Publicado: (2023)

Research and Exploratory Analysis Driven—Time-data Visualization (read-tv) software
por: Del Gaizo, John, et al.
Publicado: (2021)

A Python-based educational software tool for visualizing bioinformatics alignment algorithms
por: Khatizah, Elis, et al.
Publicado: (2023)

Surfaces: a software to quantify and visualize interactions within and between proteins and ligands
por: Teruel, Natália, et al.
Publicado: (2023)

Advances in Hydrogen/Deuterium Exchange Mass Spectrometry and the Pursuit of Challenging Biological Systems
por: James, Ellie I., et al.
Publicado: (2021)

TraceTrack, an open-source software for batch processing, alignment and visualization of sanger sequencing chromatograms
por: Brazdilova, Kveta, et al.
Publicado: (2023)

MTMDAT: Automated analysis and visualization of mass spectrometry data for tertiary and quaternary structure probing of proteins
por: Hennig, Janosch, et al.
Publicado: (2008)

Folding and assembly of large macromolecular complexes monitored by hydrogen-deuterium exchange and mass spectrometry
por: Suchanova, Bohumila, et al.
Publicado: (2008)

Computational method allowing Hydrogen-Deuterium Exchange Mass Spectrometry at single amide Resolution
por: Gessner, Chris, et al.
Publicado: (2017)

Laser Ablation Electrospray Ionization Hydrogen/Deuterium Exchange Ambient Mass Spectrometry Imaging
por: van Geenen, Fred A. M. G., et al.
Publicado: (2020)

Distinguishing between Isobaric Ions Using Microdroplet Hydrogen–Deuterium Exchange Mass Spectrometry
por: Song, Xiaowei, et al.
Publicado: (2021)

AssociationViewer: a scalable and integrated software tool for visualization of large-scale variation data in genomic context
por: Martin, Olivier, et al.
Publicado: (2009)

ProteoWizard: open source software for rapid proteomics tools development
por: Kessner, Darren, et al.
Publicado: (2008)

Structural basis of Cullin 2 RING E3 ligase regulation by the COP9 signalosome
por: Faull, Sarah V., et al.
Publicado: (2019)

Hydrogen-Deuterium Exchange Profiles of Polyubiquitin Fibrils
por: Morimoto, Daichi, et al.
Publicado: (2018)

Amide Hydrogen/Deuterium Exchange & MALDI-TOF Mass Spectrometry Analysis of Pak2 Activation
por: Hsu, Yuan-Hao, et al.
Publicado: (2011)

Histidine Hydrogen-Deuterium Exchange Mass Spectrometry for Probing the Microenvironment of Histidine Residues in Dihydrofolate Reductase
por: Miyagi, Masaru, et al.
Publicado: (2011)

Structural Analysis of Diheme Cytochrome c by Hydrogen–Deuterium Exchange Mass Spectrometry and Homology Modeling
por: Zhang, Ying, et al.
Publicado: (2014)

Application of amide hydrogen/deuterium exchange mass spectrometry for epitope mapping in human cystatin C
por: Prądzińska, Martyna, et al.
Publicado: (2016)

Suppressing allostery in epitope mapping experiments using millisecond hydrogen / deuterium exchange mass spectrometry
por: Deng, Bin, et al.
Publicado: (2017)

Recommendations for performing, interpreting and reporting hydrogen deuterium exchange mass spectrometry (HDX-MS) experiments
por: Masson, Glenn R., et al.
Publicado: (2019)

Aspergillus niger Prolyl Endoprotease for Hydrogen–Deuterium Exchange Mass Spectrometry and Protein Structural Studies
por: Tsiatsiani, Liana, et al.
Publicado: (2017)

Elucidating dynamic behavior of synthetic supramolecular polymers in water by hydrogen/deuterium exchange mass spectrometry
por: Lou, Xianwen, et al.
Publicado: (2021)

Impact of Bioconjugation on Structure and Function of Antibodies for Use in Immunoassay by Hydrogen-Deuterium Exchange Mass Spectrometry
por: Luckau, Luise, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_nc0onmj0gij63kacelufd058vs