Cargando…

Randomized Lasso Links Microbial Taxa with Aquatic Functional Groups Inferred from Flow Cytometry

High-nucleic-acid (HNA) and low-nucleic-acid (LNA) bacteria are two operational groups identified by flow cytometry (FCM) in aquatic systems. A number of reports have shown that HNA cell density correlates strongly with heterotrophic production, while LNA cell density does not. However, which taxa a...

Descripción completa

Detalles Bibliográficos
Autores principales:	Rubbens, Peter, Schmidt, Marian L., Props, Ruben, Biddanda, Bopaiah A., Boon, Nico, Waegeman, Willem, Denef, Vincent J.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	American Society for Microbiology 2019
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6739098/ https://www.ncbi.nlm.nih.gov/pubmed/31506260 http://dx.doi.org/10.1128/mSystems.00093-19

Ejemplares similares

PhenoGMM: Gaussian Mixture Modeling of Cytometry Data Quantifies Changes in Microbial Community Structure
por: Rubbens, Peter, et al.
Publicado: (2021)

Predicting the Presence and Abundance of Bacterial Taxa in Environmental Communities through Flow Cytometric Fingerprinting
por: Heyse, Jasmine, et al.
Publicado: (2021)

Flow Cytometric Single-Cell Identification of Populations in Synthetic Bacterial Communities
por: Rubbens, Peter, et al.
Publicado: (2017)

Computational Analysis of Microbial Flow Cytometry Data
por: Rubbens, Peter, et al.
Publicado: (2021)

Gene Expansion and Positive Selection as Bacterial Adaptations to Oligotrophic Conditions
por: Props, Ruben, et al.
Publicado: (2019)

Correction for Props et al., “Gene Expansion and Positive Selection as Bacterial Adaptations to Oligotrophic Conditions”
por: Props, Ruben, et al.
Publicado: (2020)

Verrucomicrobia are prevalent in north-temperate freshwater lakes and display class-level preferences between lake habitats
por: Chiang, Edna, et al.
Publicado: (2018)

Correction: Verrucomicrobia are prevalent in north-temperate freshwater lakes and display class-level preferences between lake habitats
por: Chiang, Edna, et al.
Publicado: (2018)

Raman Spectroscopy-Based Measurements of Single-Cell Phenotypic Diversity in Microbial Populations
por: García-Timermans, Cristina, et al.
Publicado: (2020)

The feasibility of automated online flow cytometry for in-situ monitoring of microbial dynamics in aquatic ecosystems
por: Besmer, Michael D., et al.
Publicado: (2014)

Time-lagged Ordered Lasso for network inference
por: Nguyen, Phan, et al.
Publicado: (2018)

Inferring the Contribution of Microbial Taxa and Organic Matter Molecular Formulas to Ecological Assembly
por: Danczak, Robert E., et al.
Publicado: (2022)

Laboratory-Scale Simulation and Real-Time Tracking of a Microbial Contamination Event and Subsequent Shock-Chlorination in Drinking Water
por: Besmer, Michael D., et al.
Publicado: (2017)

Omics-Inferred Partitioning and Expression of Diverse Biogeochemical Functions in a Low-O(2) Cyanobacterial Mat Community
por: Grim, Sharon L., et al.
Publicado: (2021)

Taxa-area relationship of aquatic fungi on deciduous leaves
por: Duarte, Sofia, et al.
Publicado: (2017)

Extant Earthly Microbial Mats and Microbialites as Models for Exploration of Life in Extraterrestrial Mat Worlds
por: Biddanda, Bopaiah, et al.
Publicado: (2021)

Initial evenness determines diversity and cell density dynamics in synthetic microbial ecosystems
por: Ehsani, Elham, et al.
Publicado: (2018)

Housekeeping in the Hydrosphere: Microbial Cooking, Cleaning, and Control under Stress
por: Biddanda, Bopaiah, et al.
Publicado: (2021)

Deep Cytometry: Deep learning with Real-time Inference in Cell Sorting and Flow Cytometry
por: Li, Yueqin, et al.
Publicado: (2019)

Aquatic beetles influence colonization of disparate taxa in small lentic systems
por: Pintar, Matthew R., et al.
Publicado: (2020)

Discovering Main Genetic Interactions with LABNet LAsso-Based Network Inference
por: Gadaleta, Francesco, et al.
Publicado: (2014)

A fast lasso-based method for inferring higher-order interactions
por: Elmes, Kieran, et al.
Publicado: (2022)

Taxa-function robustness in microbial communities
por: Eng, Alexander, et al.
Publicado: (2018)

The Effects of Increasing the Number of Taxa on Inferences of Molecular Convergence
por: Thomas, Gregg W. C., et al.
Publicado: (2017)

Novel Large Sulfur Bacteria in the Metagenomes of Groundwater-Fed Chemosynthetic Microbial Mats in the Lake Huron Basin
por: Sharrar, Allison M., et al.
Publicado: (2017)

Predominant Non-additive Effects of Multiple Stressors on Autotroph C:N:P Ratios Propagate in Freshwater and Marine Food Webs
por: Villar-Argaiz, Manuel, et al.
Publicado: (2018)

Inference of radio-responsive gene regulatory networks using the graphical lasso algorithm
por: Oh, Jung Hun, et al.
Publicado: (2014)

Gene regulatory network inference using fused LASSO on multiple data sets
por: Omranian, Nooshin, et al.
Publicado: (2016)

LassoProt: server to analyze biopolymers with lassos
por: Dabrowski-Tumanski, Pawel, et al.
Publicado: (2016)

The Evolution of Diapsid Reproductive Strategy with Inferences about Extinct Taxa
por: Moore, Jason R., et al.
Publicado: (2016)

Specialization directs habitat selection responses to a top predator in semiaquatic but not aquatic taxa
por: Šigutová, Hana, et al.
Publicado: (2021)

Bayesian inference on stochastic gene transcription from flow cytometry data
por: Tiberi, Simone, et al.
Publicado: (2018)

Imaging Flow Cytometry Protocols for Examining Phagocytosis of Microplastics and Bioparticles by Immune Cells of Aquatic Animals
por: Park, Youngjin, et al.
Publicado: (2020)

Importance-Penalized Joint Graphical Lasso (IPJGL): differential network inference via GGMs
por: Leng, Jiacheng, et al.
Publicado: (2021)

Evaluating methods for Lasso selective inference in biomedical research: a comparative simulation study
por: Kammer, Michael, et al.
Publicado: (2022)

NeuralLasso: Neural Networks Meet Lasso in Genomic Prediction
por: Mathew, Boby, et al.
Publicado: (2022)

Biological Recovery of Platinum Complexes from Diluted Aqueous Streams by Axenic Cultures
por: Maes, Synthia, et al.
Publicado: (2017)

Comparative Analyses of Plastomes of Four Anubias (Araceae) Taxa, Tropical Aquatic Plants Endemic to Africa
por: Li, Li, et al.
Publicado: (2022)

Bioorthogonal Non-canonical Amino Acid Tagging Combined With Flow Cytometry for Determination of Activity in Aquatic Microorganisms
por: Lindivat, Mathilde, et al.
Publicado: (2020)

Ecological Stability Properties of Microbial Communities Assessed by Flow Cytometry
por: Liu, Zishu, et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_j37oh17o8164fljludu40m2lsu