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Computational chemoproteomics to understand the role of selected psychoactives in treating mental health indications

We have developed the Computational Analysis of Novel Drug Opportunities (CANDO) platform to infer homology of drug behaviour at a proteomic level by constructing and analysing structural compound-proteome interaction signatures of 3,733 compounds with 48,278 proteins in a shotgun manner. We applied...

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Autores principales: Fine, Jonathan, Lackner, Rachel, Samudrala, Ram, Chopra, Gaurav
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6739337/
https://www.ncbi.nlm.nih.gov/pubmed/31511563
http://dx.doi.org/10.1038/s41598-019-49515-0
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author Fine, Jonathan
Lackner, Rachel
Samudrala, Ram
Chopra, Gaurav
author_facet Fine, Jonathan
Lackner, Rachel
Samudrala, Ram
Chopra, Gaurav
author_sort Fine, Jonathan
collection PubMed
description We have developed the Computational Analysis of Novel Drug Opportunities (CANDO) platform to infer homology of drug behaviour at a proteomic level by constructing and analysing structural compound-proteome interaction signatures of 3,733 compounds with 48,278 proteins in a shotgun manner. We applied the CANDO platform to predict putative therapeutic properties of 428 psychoactive compounds that belong to the phenylethylamine, tryptamine, and cannabinoid chemical classes for treating mental health indications. Our findings indicate that these 428 psychoactives are among the top-ranked predictions for a significant fraction of mental health indications, demonstrating a significant preference for treating such indications over non-mental health indications, relative to randomized controls. Also, we analysed the use of specific tryptamines for the treatment of sleeping disorders, bupropion for substance abuse disorders, and cannabinoids for epilepsy. Our innovative use of the CANDO platform may guide the identification and development of novel therapies for mental health indications and provide an understanding of their causal basis on a detailed mechanistic level. These predictions can be used to provide new leads for preclinical drug development for mental health and other neurological disorders.
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spelling pubmed-67393372019-09-22 Computational chemoproteomics to understand the role of selected psychoactives in treating mental health indications Fine, Jonathan Lackner, Rachel Samudrala, Ram Chopra, Gaurav Sci Rep Article We have developed the Computational Analysis of Novel Drug Opportunities (CANDO) platform to infer homology of drug behaviour at a proteomic level by constructing and analysing structural compound-proteome interaction signatures of 3,733 compounds with 48,278 proteins in a shotgun manner. We applied the CANDO platform to predict putative therapeutic properties of 428 psychoactive compounds that belong to the phenylethylamine, tryptamine, and cannabinoid chemical classes for treating mental health indications. Our findings indicate that these 428 psychoactives are among the top-ranked predictions for a significant fraction of mental health indications, demonstrating a significant preference for treating such indications over non-mental health indications, relative to randomized controls. Also, we analysed the use of specific tryptamines for the treatment of sleeping disorders, bupropion for substance abuse disorders, and cannabinoids for epilepsy. Our innovative use of the CANDO platform may guide the identification and development of novel therapies for mental health indications and provide an understanding of their causal basis on a detailed mechanistic level. These predictions can be used to provide new leads for preclinical drug development for mental health and other neurological disorders. Nature Publishing Group UK 2019-09-11 /pmc/articles/PMC6739337/ /pubmed/31511563 http://dx.doi.org/10.1038/s41598-019-49515-0 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Fine, Jonathan
Lackner, Rachel
Samudrala, Ram
Chopra, Gaurav
Computational chemoproteomics to understand the role of selected psychoactives in treating mental health indications
title Computational chemoproteomics to understand the role of selected psychoactives in treating mental health indications
title_full Computational chemoproteomics to understand the role of selected psychoactives in treating mental health indications
title_fullStr Computational chemoproteomics to understand the role of selected psychoactives in treating mental health indications
title_full_unstemmed Computational chemoproteomics to understand the role of selected psychoactives in treating mental health indications
title_short Computational chemoproteomics to understand the role of selected psychoactives in treating mental health indications
title_sort computational chemoproteomics to understand the role of selected psychoactives in treating mental health indications
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6739337/
https://www.ncbi.nlm.nih.gov/pubmed/31511563
http://dx.doi.org/10.1038/s41598-019-49515-0
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