Complete Coding Sequence of a Chikungunya Virus Strain Imported into Slovenia from Thailand in Late 2018

A case of chikungunya virus infection was imported from Thailand into Slovenia in late 2018. The infection was diagnosed using real-time reverse transcription-PCR, the virus was isolated in cell culture, and the whole genome was sequenced. Phylogenetic analysis of the nearly complete viral genome in...

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Autores principales: Zakotnik, Samo, Korva, Misa, Knap, Nataša, Robnik, Barbara, Gorišek Miksić, Nina, Avšič Županc, Tatjana
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2019
Materias:
Genome Sequences
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6742785/
https://www.ncbi.nlm.nih.gov/pubmed/31515334
http://dx.doi.org/10.1128/MRA.00581-19
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author Zakotnik, Samo
Korva, Misa
Knap, Nataša
Robnik, Barbara
Gorišek Miksić, Nina
Avšič Županc, Tatjana
author_facet Zakotnik, Samo
Korva, Misa
Knap, Nataša
Robnik, Barbara
Gorišek Miksić, Nina
Avšič Županc, Tatjana
author_sort Zakotnik, Samo
collection PubMed
description A case of chikungunya virus infection was imported from Thailand into Slovenia in late 2018. The infection was diagnosed using real-time reverse transcription-PCR, the virus was isolated in cell culture, and the whole genome was sequenced. Phylogenetic analysis of the nearly complete viral genome indicated that the virus belongs to the Indian Ocean lineage but does not possess the A226V mutation in the envelope protein E1.
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spelling pubmed-67427852019-09-24 Complete Coding Sequence of a Chikungunya Virus Strain Imported into Slovenia from Thailand in Late 2018 Zakotnik, Samo Korva, Misa Knap, Nataša Robnik, Barbara Gorišek Miksić, Nina Avšič Županc, Tatjana Microbiol Resour Announc Genome Sequences A case of chikungunya virus infection was imported from Thailand into Slovenia in late 2018. The infection was diagnosed using real-time reverse transcription-PCR, the virus was isolated in cell culture, and the whole genome was sequenced. Phylogenetic analysis of the nearly complete viral genome indicated that the virus belongs to the Indian Ocean lineage but does not possess the A226V mutation in the envelope protein E1. American Society for Microbiology 2019-09-12 /pmc/articles/PMC6742785/ /pubmed/31515334 http://dx.doi.org/10.1128/MRA.00581-19 Text en Copyright © 2019 Zakotnik et al. https://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Genome Sequences
Zakotnik, Samo
Korva, Misa
Knap, Nataša
Robnik, Barbara
Gorišek Miksić, Nina
Avšič Županc, Tatjana
Complete Coding Sequence of a Chikungunya Virus Strain Imported into Slovenia from Thailand in Late 2018
title Complete Coding Sequence of a Chikungunya Virus Strain Imported into Slovenia from Thailand in Late 2018
title_full Complete Coding Sequence of a Chikungunya Virus Strain Imported into Slovenia from Thailand in Late 2018
title_fullStr Complete Coding Sequence of a Chikungunya Virus Strain Imported into Slovenia from Thailand in Late 2018
title_full_unstemmed Complete Coding Sequence of a Chikungunya Virus Strain Imported into Slovenia from Thailand in Late 2018
title_short Complete Coding Sequence of a Chikungunya Virus Strain Imported into Slovenia from Thailand in Late 2018
title_sort complete coding sequence of a chikungunya virus strain imported into slovenia from thailand in late 2018
topic Genome Sequences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6742785/
https://www.ncbi.nlm.nih.gov/pubmed/31515334
http://dx.doi.org/10.1128/MRA.00581-19
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