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Whole-genome sequence data and analysis of Saccharibacillus sp. ATSA2 isolated from Kimchi cabbage seeds

Saccharibacillus sp. ATSA2 was isolated from Kimchi cabbage seeds grown in Gyeongbuk province in the Republic of Korea. Whole-genome sequencing of Saccharibacillus sp. ATSA2 was performed using the PacBio RSII and Illumina HiSeq platforms, and it features a 5,619,468 bp circular chromosome with 58.4...

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Autores principales: Jiang, Lingmin, Lim, Chan Ju, Jeong, Jae Cheol, Kim, Cha Young, Kim, Dae-Hyuk, Kim, Suk Weon, Lee, Jiyoung
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6743023/
https://www.ncbi.nlm.nih.gov/pubmed/31534997
http://dx.doi.org/10.1016/j.dib.2019.104465
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author Jiang, Lingmin
Lim, Chan Ju
Jeong, Jae Cheol
Kim, Cha Young
Kim, Dae-Hyuk
Kim, Suk Weon
Lee, Jiyoung
author_facet Jiang, Lingmin
Lim, Chan Ju
Jeong, Jae Cheol
Kim, Cha Young
Kim, Dae-Hyuk
Kim, Suk Weon
Lee, Jiyoung
author_sort Jiang, Lingmin
collection PubMed
description Saccharibacillus sp. ATSA2 was isolated from Kimchi cabbage seeds grown in Gyeongbuk province in the Republic of Korea. Whole-genome sequencing of Saccharibacillus sp. ATSA2 was performed using the PacBio RSII and Illumina HiSeq platforms, and it features a 5,619,468 bp circular chromosome with 58.4% G + C content. The genome includes 4543 protein-coding genes, 104 RNA genes (70 transfer RNA genes, 30 ribosomal RNA genes, and 4 non-coding RNA), and 73 pseudogenes. Multiple gene clusters associated with stress responses, nitrogen and phosphorus metabolism, and plant hormone biosynthesis were annotated in the genome. The genome information will provide fundamental knowledge of this organism as well as insight for understanding microbial activity in the agricultural application. The whole-genome sequence of Saccharibacillus sp. ATSA2 is available at GenBank/EMBL/DDBJ under accession number CP041217.
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spelling pubmed-67430232019-09-18 Whole-genome sequence data and analysis of Saccharibacillus sp. ATSA2 isolated from Kimchi cabbage seeds Jiang, Lingmin Lim, Chan Ju Jeong, Jae Cheol Kim, Cha Young Kim, Dae-Hyuk Kim, Suk Weon Lee, Jiyoung Data Brief Immunology and Microbiology Saccharibacillus sp. ATSA2 was isolated from Kimchi cabbage seeds grown in Gyeongbuk province in the Republic of Korea. Whole-genome sequencing of Saccharibacillus sp. ATSA2 was performed using the PacBio RSII and Illumina HiSeq platforms, and it features a 5,619,468 bp circular chromosome with 58.4% G + C content. The genome includes 4543 protein-coding genes, 104 RNA genes (70 transfer RNA genes, 30 ribosomal RNA genes, and 4 non-coding RNA), and 73 pseudogenes. Multiple gene clusters associated with stress responses, nitrogen and phosphorus metabolism, and plant hormone biosynthesis were annotated in the genome. The genome information will provide fundamental knowledge of this organism as well as insight for understanding microbial activity in the agricultural application. The whole-genome sequence of Saccharibacillus sp. ATSA2 is available at GenBank/EMBL/DDBJ under accession number CP041217. Elsevier 2019-08-31 /pmc/articles/PMC6743023/ /pubmed/31534997 http://dx.doi.org/10.1016/j.dib.2019.104465 Text en © 2019 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Immunology and Microbiology
Jiang, Lingmin
Lim, Chan Ju
Jeong, Jae Cheol
Kim, Cha Young
Kim, Dae-Hyuk
Kim, Suk Weon
Lee, Jiyoung
Whole-genome sequence data and analysis of Saccharibacillus sp. ATSA2 isolated from Kimchi cabbage seeds
title Whole-genome sequence data and analysis of Saccharibacillus sp. ATSA2 isolated from Kimchi cabbage seeds
title_full Whole-genome sequence data and analysis of Saccharibacillus sp. ATSA2 isolated from Kimchi cabbage seeds
title_fullStr Whole-genome sequence data and analysis of Saccharibacillus sp. ATSA2 isolated from Kimchi cabbage seeds
title_full_unstemmed Whole-genome sequence data and analysis of Saccharibacillus sp. ATSA2 isolated from Kimchi cabbage seeds
title_short Whole-genome sequence data and analysis of Saccharibacillus sp. ATSA2 isolated from Kimchi cabbage seeds
title_sort whole-genome sequence data and analysis of saccharibacillus sp. atsa2 isolated from kimchi cabbage seeds
topic Immunology and Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6743023/
https://www.ncbi.nlm.nih.gov/pubmed/31534997
http://dx.doi.org/10.1016/j.dib.2019.104465
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