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Genome sequence of the Chinese white wax scale insect Ericerus pela: the first draft genome for the Coccidae family of scale insects

BACKGROUND: The Chinese white wax scale insect, Ericerus pela, is best known for producing wax, which has been widely used in candle production, casting, Chinese medicine, and wax printing products for thousands of years. The secretion of wax, and other unusual features of scale insects, is thought...

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Autores principales: Yang, Pu, Yu, Shuhui, Hao, Junjun, Liu, Wei, Zhao, Zunling, Zhu, Zengrong, Sun, Tao, Wang, Xueqing, Song, Qisheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6743827/
https://www.ncbi.nlm.nih.gov/pubmed/31518402
http://dx.doi.org/10.1093/gigascience/giz113
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author Yang, Pu
Yu, Shuhui
Hao, Junjun
Liu, Wei
Zhao, Zunling
Zhu, Zengrong
Sun, Tao
Wang, Xueqing
Song, Qisheng
author_facet Yang, Pu
Yu, Shuhui
Hao, Junjun
Liu, Wei
Zhao, Zunling
Zhu, Zengrong
Sun, Tao
Wang, Xueqing
Song, Qisheng
author_sort Yang, Pu
collection PubMed
description BACKGROUND: The Chinese white wax scale insect, Ericerus pela, is best known for producing wax, which has been widely used in candle production, casting, Chinese medicine, and wax printing products for thousands of years. The secretion of wax, and other unusual features of scale insects, is thought to be an adaptation to their change from an ancestral ground-dwelling lifestyle to a sedentary lifestyle on the higher parts of plants. As well as helping to improve its economic value, studies of E. pela might also help to explain the adaptation of scale insects. However, no genomic data are currently available for E. pela. FINDINGS: To assemble the E. pela genome, 303.92 Gb of data were generated using Illumina and Pacific Biosciences sequencing, producing 277.22 Gb of clean data for assembly. The assembled genome size was 0.66 Gb, with 1,979 scaffolds and a scaffold N50 of 735 kb. The guanine + cytosine content was 33.80%. A total of 12,022 protein-coding genes were predicted, with a mean coding sequence length of 1,370 bp. Twenty-six fatty acyl-CoA reductase genes and 35 acyltransferase genes were identified. Evolutionary analysis revealed that E. pela and aphids formed a sister group and split ∼241.1 million years ago. There were 214 expanded gene families and 2,219 contracted gene families in E. pela. CONCLUSION: We present the first genome sequence from the Coccidae family. These results will help to increase our understanding of the evolution of unique features in scale insects, and provide important genetic information for further research.
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spelling pubmed-67438272019-09-20 Genome sequence of the Chinese white wax scale insect Ericerus pela: the first draft genome for the Coccidae family of scale insects Yang, Pu Yu, Shuhui Hao, Junjun Liu, Wei Zhao, Zunling Zhu, Zengrong Sun, Tao Wang, Xueqing Song, Qisheng Gigascience Data Note BACKGROUND: The Chinese white wax scale insect, Ericerus pela, is best known for producing wax, which has been widely used in candle production, casting, Chinese medicine, and wax printing products for thousands of years. The secretion of wax, and other unusual features of scale insects, is thought to be an adaptation to their change from an ancestral ground-dwelling lifestyle to a sedentary lifestyle on the higher parts of plants. As well as helping to improve its economic value, studies of E. pela might also help to explain the adaptation of scale insects. However, no genomic data are currently available for E. pela. FINDINGS: To assemble the E. pela genome, 303.92 Gb of data were generated using Illumina and Pacific Biosciences sequencing, producing 277.22 Gb of clean data for assembly. The assembled genome size was 0.66 Gb, with 1,979 scaffolds and a scaffold N50 of 735 kb. The guanine + cytosine content was 33.80%. A total of 12,022 protein-coding genes were predicted, with a mean coding sequence length of 1,370 bp. Twenty-six fatty acyl-CoA reductase genes and 35 acyltransferase genes were identified. Evolutionary analysis revealed that E. pela and aphids formed a sister group and split ∼241.1 million years ago. There were 214 expanded gene families and 2,219 contracted gene families in E. pela. CONCLUSION: We present the first genome sequence from the Coccidae family. These results will help to increase our understanding of the evolution of unique features in scale insects, and provide important genetic information for further research. Oxford University Press 2019-09-13 /pmc/articles/PMC6743827/ /pubmed/31518402 http://dx.doi.org/10.1093/gigascience/giz113 Text en © The Author(s) 2019. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Data Note
Yang, Pu
Yu, Shuhui
Hao, Junjun
Liu, Wei
Zhao, Zunling
Zhu, Zengrong
Sun, Tao
Wang, Xueqing
Song, Qisheng
Genome sequence of the Chinese white wax scale insect Ericerus pela: the first draft genome for the Coccidae family of scale insects
title Genome sequence of the Chinese white wax scale insect Ericerus pela: the first draft genome for the Coccidae family of scale insects
title_full Genome sequence of the Chinese white wax scale insect Ericerus pela: the first draft genome for the Coccidae family of scale insects
title_fullStr Genome sequence of the Chinese white wax scale insect Ericerus pela: the first draft genome for the Coccidae family of scale insects
title_full_unstemmed Genome sequence of the Chinese white wax scale insect Ericerus pela: the first draft genome for the Coccidae family of scale insects
title_short Genome sequence of the Chinese white wax scale insect Ericerus pela: the first draft genome for the Coccidae family of scale insects
title_sort genome sequence of the chinese white wax scale insect ericerus pela: the first draft genome for the coccidae family of scale insects
topic Data Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6743827/
https://www.ncbi.nlm.nih.gov/pubmed/31518402
http://dx.doi.org/10.1093/gigascience/giz113
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