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Technical considerations of multi-parametric tissue outcome prediction methods in acute ischemic stroke patients
Decisions regarding acute stroke treatment rely heavily on imaging, but interpretation can be difficult for physicians. Machine learning methods can assist clinicians by providing tissue outcome predictions for different treatment approaches based on acute multi-parametric imaging. To produce such c...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6744509/ https://www.ncbi.nlm.nih.gov/pubmed/31519923 http://dx.doi.org/10.1038/s41598-019-49460-y |
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author | Winder, Anthony J. Siemonsen, Susanne Flottmann, Fabian Thomalla, Götz Fiehler, Jens Forkert, Nils D. |
author_facet | Winder, Anthony J. Siemonsen, Susanne Flottmann, Fabian Thomalla, Götz Fiehler, Jens Forkert, Nils D. |
author_sort | Winder, Anthony J. |
collection | PubMed |
description | Decisions regarding acute stroke treatment rely heavily on imaging, but interpretation can be difficult for physicians. Machine learning methods can assist clinicians by providing tissue outcome predictions for different treatment approaches based on acute multi-parametric imaging. To produce such clinically viable machine learning models, factors such as classifier choice, data normalization, and data balancing must be considered. This study gives comprehensive consideration to these factors by comparing the agreement of voxel-based tissue outcome predictions using acute imaging and clinical parameters with manual lesion segmentations derived from follow-up imaging. This study considers random decision forest, generalized linear model, and k-nearest-neighbor machine learning classifiers in conjunction with three data normalization approaches (non-normalized, relative to contralateral hemisphere, and relative to contralateral VOI), and two data balancing strategies (full dataset and stratified subsampling). These classifier settings were evaluated based on 90 MRI datasets from acute ischemic stroke patients. Distinction was made between patients recanalized using intraarterial and intravenous methods, as well as those without successful recanalization. For primary quantitative comparison, the Dice metric was computed for each voxel-based tissue outcome prediction and its corresponding follow-up lesion segmentation. It was found that the random forest classifier outperformed the generalized linear model and the k-nearest-neighbor classifier, that normalization did not improve the Dice score of the lesion outcome predictions, and that the models generated lesion outcome predictions with higher Dice scores when trained with balanced datasets. No significant difference was found between the treatment groups (intraarterial vs intravenous) regarding the Dice score of the tissue outcome predictions. |
format | Online Article Text |
id | pubmed-6744509 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-67445092019-09-27 Technical considerations of multi-parametric tissue outcome prediction methods in acute ischemic stroke patients Winder, Anthony J. Siemonsen, Susanne Flottmann, Fabian Thomalla, Götz Fiehler, Jens Forkert, Nils D. Sci Rep Article Decisions regarding acute stroke treatment rely heavily on imaging, but interpretation can be difficult for physicians. Machine learning methods can assist clinicians by providing tissue outcome predictions for different treatment approaches based on acute multi-parametric imaging. To produce such clinically viable machine learning models, factors such as classifier choice, data normalization, and data balancing must be considered. This study gives comprehensive consideration to these factors by comparing the agreement of voxel-based tissue outcome predictions using acute imaging and clinical parameters with manual lesion segmentations derived from follow-up imaging. This study considers random decision forest, generalized linear model, and k-nearest-neighbor machine learning classifiers in conjunction with three data normalization approaches (non-normalized, relative to contralateral hemisphere, and relative to contralateral VOI), and two data balancing strategies (full dataset and stratified subsampling). These classifier settings were evaluated based on 90 MRI datasets from acute ischemic stroke patients. Distinction was made between patients recanalized using intraarterial and intravenous methods, as well as those without successful recanalization. For primary quantitative comparison, the Dice metric was computed for each voxel-based tissue outcome prediction and its corresponding follow-up lesion segmentation. It was found that the random forest classifier outperformed the generalized linear model and the k-nearest-neighbor classifier, that normalization did not improve the Dice score of the lesion outcome predictions, and that the models generated lesion outcome predictions with higher Dice scores when trained with balanced datasets. No significant difference was found between the treatment groups (intraarterial vs intravenous) regarding the Dice score of the tissue outcome predictions. Nature Publishing Group UK 2019-09-13 /pmc/articles/PMC6744509/ /pubmed/31519923 http://dx.doi.org/10.1038/s41598-019-49460-y Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Winder, Anthony J. Siemonsen, Susanne Flottmann, Fabian Thomalla, Götz Fiehler, Jens Forkert, Nils D. Technical considerations of multi-parametric tissue outcome prediction methods in acute ischemic stroke patients |
title | Technical considerations of multi-parametric tissue outcome prediction methods in acute ischemic stroke patients |
title_full | Technical considerations of multi-parametric tissue outcome prediction methods in acute ischemic stroke patients |
title_fullStr | Technical considerations of multi-parametric tissue outcome prediction methods in acute ischemic stroke patients |
title_full_unstemmed | Technical considerations of multi-parametric tissue outcome prediction methods in acute ischemic stroke patients |
title_short | Technical considerations of multi-parametric tissue outcome prediction methods in acute ischemic stroke patients |
title_sort | technical considerations of multi-parametric tissue outcome prediction methods in acute ischemic stroke patients |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6744509/ https://www.ncbi.nlm.nih.gov/pubmed/31519923 http://dx.doi.org/10.1038/s41598-019-49460-y |
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