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Calculation of narrower confidence intervals for tree mortality rates when we know nothing but the location of the death/survival events
1. Many ecological applications, like the study of mortality rates, require the estimation of proportions and confidence intervals for them. The traditional way of doing this applies the binomial distribution, which describes the outcome of a series of Bernoulli trials. This distribution assumes tha...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2019
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6745667/ https://www.ncbi.nlm.nih.gov/pubmed/31534682 http://dx.doi.org/10.1002/ece3.5495 |
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author | Arellano, Gabriel |
author_facet | Arellano, Gabriel |
author_sort | Arellano, Gabriel |
collection | PubMed |
description | 1. Many ecological applications, like the study of mortality rates, require the estimation of proportions and confidence intervals for them. The traditional way of doing this applies the binomial distribution, which describes the outcome of a series of Bernoulli trials. This distribution assumes that observations are independent and the probability of success is the same for all the individual observations. Both assumptions are obviously false in many cases. 2. I show how to apply bootstrap and the Poisson binomial distribution (a generalization of the binomial distribution) to the estimation of proportions. Any information at the individual level would result in better (narrower) confidence intervals around the estimation of proportions. As a case study, I applied this method to the calculation of mortality rates in a forest plot of tropical trees in Lambir Hills National Park, Malaysia. 3. I calculated central estimates and 95% confidence intervals for species‐level mortality rates for 1,007 tree species. I used a very simple model of spatial dependence in survival to estimate individual‐level risk of mortality. The results obtained by accounting for heterogeneity in individual‐level risk of mortality were comparable to those obtained with the binomial distribution in terms of central estimates, but the precision increased in virtually all cases, with an average reduction in the width of the confidence interval of ~20%. 4. Spatial information allows the estimation of individual‐level probabilities of survival, and this increases the precision in the estimates of mortality rates. The general method described here, with modifications, could be applied to reduce uncertainty in the estimation of proportions related to any spatially structured phenomenon with two possible outcomes. More sophisticated approaches can yield better estimates of individual‐level mortality and thus narrower confidence intervals. |
format | Online Article Text |
id | pubmed-6745667 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-67456672019-09-18 Calculation of narrower confidence intervals for tree mortality rates when we know nothing but the location of the death/survival events Arellano, Gabriel Ecol Evol Original Research 1. Many ecological applications, like the study of mortality rates, require the estimation of proportions and confidence intervals for them. The traditional way of doing this applies the binomial distribution, which describes the outcome of a series of Bernoulli trials. This distribution assumes that observations are independent and the probability of success is the same for all the individual observations. Both assumptions are obviously false in many cases. 2. I show how to apply bootstrap and the Poisson binomial distribution (a generalization of the binomial distribution) to the estimation of proportions. Any information at the individual level would result in better (narrower) confidence intervals around the estimation of proportions. As a case study, I applied this method to the calculation of mortality rates in a forest plot of tropical trees in Lambir Hills National Park, Malaysia. 3. I calculated central estimates and 95% confidence intervals for species‐level mortality rates for 1,007 tree species. I used a very simple model of spatial dependence in survival to estimate individual‐level risk of mortality. The results obtained by accounting for heterogeneity in individual‐level risk of mortality were comparable to those obtained with the binomial distribution in terms of central estimates, but the precision increased in virtually all cases, with an average reduction in the width of the confidence interval of ~20%. 4. Spatial information allows the estimation of individual‐level probabilities of survival, and this increases the precision in the estimates of mortality rates. The general method described here, with modifications, could be applied to reduce uncertainty in the estimation of proportions related to any spatially structured phenomenon with two possible outcomes. More sophisticated approaches can yield better estimates of individual‐level mortality and thus narrower confidence intervals. John Wiley and Sons Inc. 2019-07-30 /pmc/articles/PMC6745667/ /pubmed/31534682 http://dx.doi.org/10.1002/ece3.5495 Text en © 2019 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Research Arellano, Gabriel Calculation of narrower confidence intervals for tree mortality rates when we know nothing but the location of the death/survival events |
title | Calculation of narrower confidence intervals for tree mortality rates when we know nothing but the location of the death/survival events |
title_full | Calculation of narrower confidence intervals for tree mortality rates when we know nothing but the location of the death/survival events |
title_fullStr | Calculation of narrower confidence intervals for tree mortality rates when we know nothing but the location of the death/survival events |
title_full_unstemmed | Calculation of narrower confidence intervals for tree mortality rates when we know nothing but the location of the death/survival events |
title_short | Calculation of narrower confidence intervals for tree mortality rates when we know nothing but the location of the death/survival events |
title_sort | calculation of narrower confidence intervals for tree mortality rates when we know nothing but the location of the death/survival events |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6745667/ https://www.ncbi.nlm.nih.gov/pubmed/31534682 http://dx.doi.org/10.1002/ece3.5495 |
work_keys_str_mv | AT arellanogabriel calculationofnarrowerconfidenceintervalsfortreemortalityrateswhenweknownothingbutthelocationofthedeathsurvivalevents |