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Plastid Genomes of Carnivorous Plants Drosera rotundifolia and Nepenthes × ventrata Reveal Evolutionary Patterns Resembling Those Observed in Parasitic Plants

Carnivorous plants have the ability to capture and digest small animals as a source of additional nutrients, which allows them to grow in nutrient-poor habitats. Here we report the complete sequences of the plastid genomes of two carnivorous plants of the order Caryophyllales, Drosera rotundifolia a...

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Autores principales: Gruzdev, Eugeny V., Kadnikov, Vitaly V., Beletsky, Alexey V., Kochieva, Elena Z., Mardanov, Andrey V., Skryabin, Konstantin G., Ravin, Nikolai V.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6747624/
https://www.ncbi.nlm.nih.gov/pubmed/31443555
http://dx.doi.org/10.3390/ijms20174107
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author Gruzdev, Eugeny V.
Kadnikov, Vitaly V.
Beletsky, Alexey V.
Kochieva, Elena Z.
Mardanov, Andrey V.
Skryabin, Konstantin G.
Ravin, Nikolai V.
author_facet Gruzdev, Eugeny V.
Kadnikov, Vitaly V.
Beletsky, Alexey V.
Kochieva, Elena Z.
Mardanov, Andrey V.
Skryabin, Konstantin G.
Ravin, Nikolai V.
author_sort Gruzdev, Eugeny V.
collection PubMed
description Carnivorous plants have the ability to capture and digest small animals as a source of additional nutrients, which allows them to grow in nutrient-poor habitats. Here we report the complete sequences of the plastid genomes of two carnivorous plants of the order Caryophyllales, Drosera rotundifolia and Nepenthes × ventrata. The plastome of D. rotundifolia is repeat-rich and highly rearranged. It lacks NAD(P)H dehydrogenase genes, as well as ycf1 and ycf2 genes, and three essential tRNA genes. Intron losses are observed in some protein-coding and tRNA genes along with a pronounced reduction of RNA editing sites. Only six editing sites were identified by RNA-seq in D. rotundifolia plastid genome and at most conserved editing sites the conserved amino acids are already encoded at the DNA level. In contrast, the N. × ventrata plastome has a typical structure and gene content, except for pseudogenization of the ccsA gene. N. × ventrata and D. rotundifolia could represent different stages of evolution of the plastid genomes of carnivorous plants, resembling events observed in parasitic plants in the course of the switch from autotrophy to a heterotrophic lifestyle.
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spelling pubmed-67476242019-09-27 Plastid Genomes of Carnivorous Plants Drosera rotundifolia and Nepenthes × ventrata Reveal Evolutionary Patterns Resembling Those Observed in Parasitic Plants Gruzdev, Eugeny V. Kadnikov, Vitaly V. Beletsky, Alexey V. Kochieva, Elena Z. Mardanov, Andrey V. Skryabin, Konstantin G. Ravin, Nikolai V. Int J Mol Sci Article Carnivorous plants have the ability to capture and digest small animals as a source of additional nutrients, which allows them to grow in nutrient-poor habitats. Here we report the complete sequences of the plastid genomes of two carnivorous plants of the order Caryophyllales, Drosera rotundifolia and Nepenthes × ventrata. The plastome of D. rotundifolia is repeat-rich and highly rearranged. It lacks NAD(P)H dehydrogenase genes, as well as ycf1 and ycf2 genes, and three essential tRNA genes. Intron losses are observed in some protein-coding and tRNA genes along with a pronounced reduction of RNA editing sites. Only six editing sites were identified by RNA-seq in D. rotundifolia plastid genome and at most conserved editing sites the conserved amino acids are already encoded at the DNA level. In contrast, the N. × ventrata plastome has a typical structure and gene content, except for pseudogenization of the ccsA gene. N. × ventrata and D. rotundifolia could represent different stages of evolution of the plastid genomes of carnivorous plants, resembling events observed in parasitic plants in the course of the switch from autotrophy to a heterotrophic lifestyle. MDPI 2019-08-22 /pmc/articles/PMC6747624/ /pubmed/31443555 http://dx.doi.org/10.3390/ijms20174107 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Gruzdev, Eugeny V.
Kadnikov, Vitaly V.
Beletsky, Alexey V.
Kochieva, Elena Z.
Mardanov, Andrey V.
Skryabin, Konstantin G.
Ravin, Nikolai V.
Plastid Genomes of Carnivorous Plants Drosera rotundifolia and Nepenthes × ventrata Reveal Evolutionary Patterns Resembling Those Observed in Parasitic Plants
title Plastid Genomes of Carnivorous Plants Drosera rotundifolia and Nepenthes × ventrata Reveal Evolutionary Patterns Resembling Those Observed in Parasitic Plants
title_full Plastid Genomes of Carnivorous Plants Drosera rotundifolia and Nepenthes × ventrata Reveal Evolutionary Patterns Resembling Those Observed in Parasitic Plants
title_fullStr Plastid Genomes of Carnivorous Plants Drosera rotundifolia and Nepenthes × ventrata Reveal Evolutionary Patterns Resembling Those Observed in Parasitic Plants
title_full_unstemmed Plastid Genomes of Carnivorous Plants Drosera rotundifolia and Nepenthes × ventrata Reveal Evolutionary Patterns Resembling Those Observed in Parasitic Plants
title_short Plastid Genomes of Carnivorous Plants Drosera rotundifolia and Nepenthes × ventrata Reveal Evolutionary Patterns Resembling Those Observed in Parasitic Plants
title_sort plastid genomes of carnivorous plants drosera rotundifolia and nepenthes × ventrata reveal evolutionary patterns resembling those observed in parasitic plants
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6747624/
https://www.ncbi.nlm.nih.gov/pubmed/31443555
http://dx.doi.org/10.3390/ijms20174107
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